View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_3 (Length: 730)
Name: NF3136_low_3
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 26 - 729
Target Start/End: Complemental strand, 44067560 - 44066857
Alignment:
| Q |
26 |
acaaacctattcagctaaaaagatcaagctacaagccatctaaaaagcctcataggcctaaaaggctgacctatttaaatgaatataaatagtattataa |
125 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067560 |
acaaacctattcagctaaaaagatcaagctactagccatctaaaaagcctcataggcctaaaaggctgacctatttaaatgaatataaatagtattataa |
44067461 |
T |
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| Q |
126 |
tatttctgttcttattatagtaagatttttataatgtgttcaaatcatttacttaactatttacccttttnnnnnnntaagaannnnnnncattnnnnnn |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
44067460 |
tatttctgttcttattatagtaagatttttataatgtgttcaaatcatttacttaactatttacccttttaaagaaataagaatttttttcattaaaaaa |
44067361 |
T |
|
| Q |
226 |
ntcagcaaatgcatacataaaaacacttcagattatttagcgatatgtttatggaatgatagcaaaatatacttttaaaaagtcagacatcaaaaaacac |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44067360 |
atcagcaaatgcatacataaaaacacttcagattatttagcgatatgtttatggaatgattgcaaaatatacttttaaaaagtcagacatcaaaaaacac |
44067261 |
T |
|
| Q |
326 |
ttttatcatataaacaagacaatcacaatcttggagaatattcaacttaacccactcaatttcgacactcacttatcatgccttgacaccttttgtttta |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067260 |
ttttatcatataaacaagacaatcacaatcttggagaatattcaacttaacccactcaatttcgacactcacttatcatgccttgacaccttttgtttta |
44067161 |
T |
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| Q |
426 |
aagggtcagtgttagtattgttcgtattatgctgggagtagggatcgaactctccacctcctcatcactccactccttgaccctttatttatcttgtcca |
525 |
Q |
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| T |
44067160 |
aagggtcagtgttagtattgttcgtattatgctgggagtagggatcgaactctccacctcctcatcactccactccttgaccctttatttatcttgtcca |
44067061 |
T |
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| Q |
526 |
tgttcgcctattagcgcttgaatgcacttagaacttagagatacggtgatttggagtttagacttttggattggnnnnnnnagaaattcatggtctagtt |
625 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
44067060 |
tgttcgcctattagcgcttgaacgcacttagaacttagagatacggtgatttggagtttagacttttgaattggtttttttagaaattcatggtctagtt |
44066961 |
T |
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| Q |
626 |
tattctataaatattgtgttttcagagacctaaaatgcaattagccataagaaatatattacgaggcagataaaacttgaatgacctacctctctgctgc |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
44066960 |
tattctataaatattgtgttttcagagacctaaaatgcaattagccataagaaatatattacgaggcagataaaacttgaatgacagacctctttgctgg |
44066861 |
T |
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| Q |
726 |
tcca |
729 |
Q |
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|||| |
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| T |
44066860 |
tcca |
44066857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 497
Target Start/End: Original strand, 29137250 - 29137312
Alignment:
| Q |
435 |
tgttagtattgttcgtattatgctgggagtagggatcgaactctccacctcctcatcactcca |
497 |
Q |
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| T |
29137250 |
tgttagtattgtcagtattatgctgggagtggggatcaaaccctcgacctccttataactcca |
29137312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 52845 - 52905
Alignment:
| Q |
56 |
acaagccatctaaaaagcctcataggcctaaaaggctgacctatttaaatgaatataaata |
116 |
Q |
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| T |
52845 |
acaagccatctaaaaagcatcttaggcctattaggccgacctatttaaataaatatgaata |
52905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 4767873 - 4767824
Alignment:
| Q |
451 |
attatgctgggagtagggatcgaactctccacctcctcatcactccactc |
500 |
Q |
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| T |
4767873 |
attatgctgggagtaggaatcgaactcccaacctccttagcactccactc |
4767824 |
T |
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