View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_4 (Length: 665)
Name: NF3136_low_4
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 147 - 651
Target Start/End: Original strand, 11026998 - 11027499
Alignment:
| Q |
147 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggnnnnnnnnactcataggtgttaa |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |
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| T |
11026998 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggttttttt-actcatagattttaa |
11027096 |
T |
|
| Q |
247 |
gttaattttcttgatgttgacattttgtactgcaaaggtttacccattttaaannnnnnnaaacagatgaacagccacagatcaccatcttacaccttcc |
346 |
Q |
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| T |
11027097 |
gttaattttcttgatgttgacattttgtactgcaaaggtttacc-attttaattttttttaaacaggtgaacagccacagatcaccagcttacaccttcc |
11027195 |
T |
|
| Q |
347 |
aacttcacaatccaaaatatacaaatggaacctaattttgtcacaccatatactgttccaacaattcattaaaattatatcacatttcaaaacacttaaa |
446 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
11027196 |
aacttcacaatccaaaatatacaaatggaaccaaattttgtaacaccatatactgttccaacaattcattataattatatcacatatcaaaacacttaaa |
11027295 |
T |
|
| Q |
447 |
ttatactatagcttctctccatgtgnnnnnnntcaccctgcttcctctcatgcacacatatataaaaactggaaccaaaccttatatataaaaaattaac |
546 |
Q |
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| T |
11027296 |
ttatactatagcttctctccatgtgaaaaaa-tcaccctgcttcctctcatgcacacatatataaaaactggaaccaaaccttatatataaaaaattaac |
11027394 |
T |
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| Q |
547 |
cctagtaaaatatcagttgagatcattttgctgttctagacattcatggtaaagtaattacattcactggtatcatcactaaaacaatagagtaccaatg |
646 |
Q |
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| T |
11027395 |
cctagtaaaatatcagttgagatcattttgttgttctagacattcttggtaaagtaattacattcactggtatcatcaataaaacaatagagtaccaatg |
11027494 |
T |
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| Q |
647 |
taaaa |
651 |
Q |
| |
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||||| |
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| T |
11027495 |
taaaa |
11027499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11026851 - 11026960
Alignment:
| Q |
1 |
ttcccaatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026851 |
ttcccaatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaatt |
11026950 |
T |
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| Q |
101 |
gtgaaatata |
110 |
Q |
| |
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|||||||||| |
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| T |
11026951 |
gtgaaatata |
11026960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 10907311 - 10907415
Alignment:
| Q |
5 |
caatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtga |
104 |
Q |
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| T |
10907311 |
caatctagacagcctaggagaaatggtggagctacaattactagacaactaactcaagagttagatgtaattcaagagttagaatgacttacaattgtaa |
10907410 |
T |
|
| Q |
105 |
aatat |
109 |
Q |
| |
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||||| |
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|
| T |
10907411 |
aatat |
10907415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 651
Target Start/End: Original strand, 11042060 - 11042113
Alignment:
| Q |
598 |
aagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaa |
651 |
Q |
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||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||| |
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| T |
11042060 |
aagtaattacattcactggtatcctcattaaaacaatggagtaccaacgtaaaa |
11042113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 10931195 - 10931299
Alignment:
| Q |
5 |
caatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtga |
104 |
Q |
| |
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|||||||||||||||||||| | || | | || || |||||||||| |||| || | || ||||||||||||||| ||||||||||||||||||| | |
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| T |
10931195 |
caatctagacaacctaggagaaatggcggagctaaaattactagacaactaactcaagagttggatgtaattcaagagttagattgacttacaattgtaa |
10931294 |
T |
|
| Q |
105 |
aatat |
109 |
Q |
| |
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||||| |
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|
| T |
10931295 |
aatat |
10931299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 10993399 - 10993503
Alignment:
| Q |
5 |
caatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtga |
104 |
Q |
| |
|
|||||||||||||||||||| | || || | ||||| |||||||||| | || || | |||||||||||||||||| | || |||||||||||||| | |
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| T |
10993399 |
caatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatgacttacaattgtaa |
10993498 |
T |
|
| Q |
105 |
aatat |
109 |
Q |
| |
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||||| |
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|
| T |
10993499 |
aatat |
10993503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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