View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3136_low_5 (Length: 543)
Name: NF3136_low_5
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 41584649 - 41584135
Alignment:
| Q |
18 |
atccttaaaccataaaaatatattccaacattacagaagaaaatatcaaagccgaaaattgatatgcagaacaaggacactgagatcatttgctgcaaag |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584649 |
atccttaaaccataaaaatatataccaacattacagaagaaaatatcaaagccgaaaattaatatgcagaacaaggacactgagatcatttgctgcaaag |
41584550 |
T |
|
| Q |
118 |
catatatgttttattgaatacagcttgtgtgtgtgt--atcaggtgagcctttatatctctgtccatctcttcgagatcaattttccaaaattttagttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584549 |
catatatgttttattgaatacagcttgtgtgtgtgtgtatcaggtgagcctttatatctctgtccatctcttcgagatcaattttccaaaattttagttt |
41584450 |
T |
|
| Q |
216 |
ttcctgtctaagcaatgcacttcaaagagaaagcgtagactaacttgactacaataatagtcatacattnnnnnnnnncataaaaagttaacctgattcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | || |||||| ||| |
|
|
| T |
41584449 |
ttcctgtctaagcaatgcacttcaaagagaaagcgtagactaacttgactacaataatagtcata---ttaaaaaaaacataaagaatt-acctgactcc |
41584354 |
T |
|
| Q |
316 |
taactacttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttccttta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584353 |
taactacttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttccttta |
41584254 |
T |
|
| Q |
416 |
gcttcatgtttgccaagtgcctatccatagacttcatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttct |
515 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584253 |
gcttcatgttagccaagtgcctatccatagactccatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttct |
41584154 |
T |
|
| Q |
516 |
tgacattttcctattcata |
534 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41584153 |
tgacattttcctattcata |
41584135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 40179561 - 40179641
Alignment:
| Q |
323 |
ttttcctaaccttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagat |
403 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| | | |||| | ||| ||||||||||||| |||||||||| |
|
|
| T |
40179561 |
ttttccaaacattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagat |
40179641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 534
Target Start/End: Original strand, 38604150 - 38604236
Alignment:
| Q |
448 |
ttcatttcggctagctgctcttctgccatctccttatccaaagactccattgcctctagctgctttcttgacattttcctattcata |
534 |
Q |
| |
|
|||||||| |||||||| | ||||||||| ||| |||||| || ||||||| ||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
38604150 |
ttcatttcagctagctgattttctgccatttccctatccataggctccatttcctctagctgcactattgtcattttcctatccata |
38604236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 44461361 - 44461287
Alignment:
| Q |
336 |
ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc |
410 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
44461361 |
ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc |
44461287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 44468894 - 44468820
Alignment:
| Q |
336 |
ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc |
410 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
44468894 |
ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc |
44468820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 46360170 - 46360096
Alignment:
| Q |
336 |
ttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagattcatttc |
410 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
46360170 |
ttctcaactcaattaattttgcatcaagattctaacttcctatcaaaataatgccctaatattaagatacatttc |
46360096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University