View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_6 (Length: 537)
Name: NF3136_low_6
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 20 - 524
Target Start/End: Original strand, 21993409 - 21993913
Alignment:
| Q |
20 |
atgacgacgctgaatggaagactaatggtgatgaaagagaagtggttgtggagagaacagacgatgcaaacagtgttagagtcacagtttctggtttgct |
119 |
Q |
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| T |
21993409 |
atgacgacgctgaatggaagactaatggtgatgaaagagaagtggttgtggagagaacagacgatgcaaacagtgttagagtcacagtttctggtttgct |
21993508 |
T |
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| Q |
120 |
tgaaatggacataagggtaaggcctattggagaaaaagaaaacaaggctcacaattaccaattaccatcagatgatgcttttgctcatttggagacacaa |
219 |
Q |
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| T |
21993509 |
tgaaatggacataagggtaaggcctattggagaaaaagaaaacaaggctcacaattaccaattaccatcagatgatgcttttgctcatttggagacacaa |
21993608 |
T |
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| Q |
220 |
ttcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgttagtcctgttaagagaggagttgctatgccaa |
319 |
Q |
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| T |
21993609 |
ttcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgttagtcctgtcaagagaggtgttgctatgccaa |
21993708 |
T |
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| Q |
320 |
tgatgggaggagaagacaagtaccaaactccatctcttttttcaacaacatgcaaactatgcaggtttcagaggccttccactagccaaggactcattgc |
419 |
Q |
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| T |
21993709 |
tgatgggaggagaagacaagtaccaaactccatctcttttttcaacaacatgcaaactatgcaggtttcagaggccttccactagccaaggactcattgc |
21993808 |
T |
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| Q |
420 |
tcaatattgataattcatgaattatgaaaaataagagattctttgtattatgaaaataagagattctttgtgattgaattggtgatgtcttttaatttgg |
519 |
Q |
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| T |
21993809 |
tcaatattgataattcatgaattatgaaaaataagagattctttgtattatgaaaataagagattctttgtgattgaattggtgatgtcttttaatttgg |
21993908 |
T |
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| Q |
520 |
tttct |
524 |
Q |
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||||| |
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| T |
21993909 |
tttct |
21993913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 53 - 465
Target Start/End: Original strand, 22010661 - 22011074
Alignment:
| Q |
53 |
aaagagaagtggttgtggagagaacagacgatgcaaacagtgttagagtcacagtttctggtttgcttgaaatggacataagggtaaggcctattggaga |
152 |
Q |
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| T |
22010661 |
aaagagaagtgattgtggaaagaacagatgatgcaaacagtgttagagtgacagtttctggtttgcttgaaatggacataagggtaagacctattggaga |
22010760 |
T |
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| Q |
153 |
aaaagaaaacaaggctcacaattaccaattaccatcagatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaa |
252 |
Q |
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| T |
22010761 |
aaaggaaaacaaggctcacaattaccaattgccatctgatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaa |
22010860 |
T |
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| Q |
253 |
ggagttttaggtcaaacttataggccaagttatgttagtcctgttaagagaggagttgctatgccaatgatgggaggagaagacaagtaccaaactccat |
352 |
Q |
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| T |
22010861 |
ggagttttaggtcaaacttataggccaagttatgttagtcctgttaagagaggtgttgctatgccaatgatgggaggagaagacaagtaccaaactccat |
22010960 |
T |
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| Q |
353 |
ctcttttttcaacaacatgcaaactatgcaggtttcagaggccttccactagccaaggactcattgctcaatattgataat-tcatgaattatgaaaaat |
451 |
Q |
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|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| || ||||| ||||||||| |
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| T |
22010961 |
ctctcttttcaacaacctgcaaactctgcaggttccagaggccttccactagccaaggactaattgctgaatactgataatatcttgaatcatgaaaaat |
22011060 |
T |
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| Q |
452 |
aagagattctttgt |
465 |
Q |
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| T |
22011061 |
aagagattctttgt |
22011074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 22011056 - 22011108
Alignment:
| Q |
472 |
aaaataagagattctttgtgattgaattggtgatgtcttttaatttggtttct |
524 |
Q |
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|||||||||||||||||||| |||||||||||| | ||||| |||||||||| |
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| T |
22011056 |
aaaataagagattctttgtggttgaattggtgacatgttttattttggtttct |
22011108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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