View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3136_low_7 (Length: 508)
Name: NF3136_low_7
Description: NF3136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3136_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 222 - 463
Target Start/End: Original strand, 44215248 - 44215489
Alignment:
| Q |
222 |
taagctctaatatacatcaacataagatttcacaatatgaaaacacaagtgtaaaaaatgatgttattgtttttcaaatccaatgcatacagatccaaga |
321 |
Q |
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| T |
44215248 |
taagctctaatatacatcaacataagatttcacaatatgaaaacacaagtgtaaaaaatgatgttattgtttttcaaatccaatgcatacagatccaaga |
44215347 |
T |
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| Q |
322 |
aaggggtctcagatccataagggtggcattgaaatataagattaaataagaaaaagtgagatcaaacacagtattgggaaagattccatttttgtttttc |
421 |
Q |
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| T |
44215348 |
aaggggtctcagatccataagggtggcattgaaatataagattaaataagaaaaagtgagatcaaacacagtattgggaaagattccatttttgtttttc |
44215447 |
T |
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| Q |
422 |
tcttcttgaaatgggaaacagaaatgatgattcaatcaatcc |
463 |
Q |
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| T |
44215448 |
tcttcttgaaatgggaaacagaaatgatgattcaatcaatcc |
44215489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 44215027 - 44215177
Alignment:
| Q |
1 |
aaagacttgactcagagttacaatagtctcaattcaagagtggtgaaagtgaatcatagctgtgatcaaaatagatcttgcatcaaaatcaaaagtataa |
100 |
Q |
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| T |
44215027 |
aaagacttgactaagagttacaatagtctcaattcaagagtggtgaaagtgaatcatagctgtgatcaaaatagatcttgcatcaaaatcaaaagtataa |
44215126 |
T |
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| Q |
101 |
ttctattcagatcatacacagtaaagtggatttggtggttgaagatgcttg |
151 |
Q |
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| T |
44215127 |
ttctattcagatcatacacagtaaagtggatttggtggttgaagatgcttg |
44215177 |
T |
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