View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3137_high_15 (Length: 207)
Name: NF3137_high_15
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_high_15 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 31331933 - 31332106
Alignment:
| Q |
18 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatcaatgacaccaaaaagagaccccttgaaaaaggaattatagaaacca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31331933 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatcaatgacaccaaaaagagaccccttgaaaaaggaattatagaaatca |
31332032 |
T |
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| Q |
118 |
tgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
191 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332033 |
tgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
31332106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 31319680 - 31319853
Alignment:
| Q |
18 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatcaatgacaccaaaaagagaccccttgaaaaaggaattatagaaacca |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31319680 |
ccagcatggaaagccattggatatgaggtatcaacagctgatgagaaaatgaccaatgacaccaaaaagagaccccttgaaaaaggaattatagaaatca |
31319779 |
T |
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| Q |
118 |
tgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
191 |
Q |
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| T |
31319780 |
tgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
31319853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 3990 - 3817
Alignment:
| Q |
18 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatcaatgacaccaaaaagagaccccttgaaaaaggaattatagaaacca |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3990 |
ccagcatggaaagccattggatatgaggtatcaacagctgatgagaaaatgaccaatgacaccaaaaagagaccccttgaaaaaggaattatagaaatca |
3891 |
T |
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| Q |
118 |
tgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
191 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3890 |
tgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaac |
3817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1847 - 1900
Alignment:
| Q |
18 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatc |
71 |
Q |
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| T |
1847 |
ccagcatggaaagccattggatatgaagtatcaacagctgatgagaaaatgatc |
1900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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