View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3137_high_8 (Length: 238)
Name: NF3137_high_8
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 30742460 - 30742671
Alignment:
| Q |
17 |
acattgcataccatgtatataaccatctcttaaccttttccatagatttgttgataaccttaagatctttggttgaactttttccatcatttcaaaaaag |
116 |
Q |
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| T |
30742460 |
acattgcataccatgtatataaccatctcttaaccttttccatagatttgttgataaccttaagatctttggttgaactttttccatcatttcaaaaaag |
30742559 |
T |
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| Q |
117 |
ttcaaattctttgaacctaacatagcaacattttcattaatattgcaatcactcacctctttgttgctcttgagcttatggtatatttttctctttgtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742560 |
ttcaaattctttgaacctaacatagcaacattttcattaatagtgcaatcactcacctctttgttgctcttgagcttatggtatatttttctctttgtgt |
30742659 |
T |
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| Q |
217 |
accctatgcttc |
228 |
Q |
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||| |||||||| |
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| T |
30742660 |
accttatgcttc |
30742671 |
T |
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