View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3137_low_1 (Length: 589)
Name: NF3137_low_1
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 572
Target Start/End: Complemental strand, 10202395 - 10201837
Alignment:
| Q |
14 |
cacagagccatgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaa |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202395 |
cacagaaccatgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaa |
10202296 |
T |
|
| Q |
114 |
ctatttcctctaccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaatttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202295 |
ctatttcctctaccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaatttt |
10202196 |
T |
|
| Q |
214 |
ctacatatccaatttttcccgaggcgacatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacga |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
10202195 |
ctacatatccaatttttcccgaagcgacatgcctgttataaaaatcaaccatgaagttattgtcaatctcatcattcgcagtctcttccccggacaacga |
10202096 |
T |
|
| Q |
314 |
cattaaaatctctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202095 |
cattaaaatctctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaatt |
10201996 |
T |
|
| Q |
414 |
cgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccnnnnnnnngtgttgcaacattttgaatggtttcagattcta |
513 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10201995 |
cgagggcattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacattttgaatggtttcagattcta |
10201896 |
T |
|
| Q |
514 |
ttagttccgagaaaccaaatgacgtagtaagtcctctttctataattacaccgacagaa |
572 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10201895 |
ttagttccgagaaaccaaatgatgtagtaagtcctctttctataattacaccgacagaa |
10201837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 15 - 472
Target Start/End: Complemental strand, 51741593 - 51741139
Alignment:
| Q |
15 |
acagagccatgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaac |
114 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| || | ||||||||| | |||||||||||||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
51741593 |
acagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaac |
51741494 |
T |
|
| Q |
115 |
tatttcctctaccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttc |
214 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| |
|
|
| T |
51741493 |
tatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttc |
51741394 |
T |
|
| Q |
215 |
tacatatccaatttttcccgaggcgacatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgac |
314 |
Q |
| |
|
||||||||||| | ||| || || |||| ||||||||| ||||||||||| || |||||||||||||| ||| |||| |||||||| || || ||| |
|
|
| T |
51741393 |
cacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctca---ttcacagtctcttcccctgataaagac |
51741297 |
T |
|
| Q |
315 |
attaaaatctctttttccttagattgtactccacttttatcaatttgttcattttctaatttagac---gacaacaaaaatctaatgattgtcaagttaa |
411 |
Q |
| |
|
|||||||| |||||||| | | |||||||||||||| ||||| ||||| || | | | |||| ||||| |||||||| |||||||||| |||| |
|
|
| T |
51741296 |
attaaaatttctttttcatcatattgtactccactt---tcaatatgttctttatgtgacaaagacgaagacaaaaaaaatctgatgattgtcagattaa |
51741200 |
T |
|
| Q |
412 |
ttcgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctcc |
472 |
Q |
| |
|
| ||||| ||||||||||| | |||||||||||| | |||||| || || ||||| ||||| |
|
|
| T |
51741199 |
tgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctcc |
51741139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University