View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3137_low_10 (Length: 220)
Name: NF3137_low_10
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 36793247 - 36793064
Alignment:
| Q |
17 |
agagaaccagcagtacacacaccaacaacacaaaccatgtctaaaaata-gaatccaatttaactgtaaaagaaatcaaccacaagttttaagcacagaa |
115 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36793247 |
agagaaccagcagtacac----caacaaaacaaaccatgtctaaaaacaagaatccaatttaactgtaaaagaaatcaaccacaagttttaagcacggaa |
36793152 |
T |
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| Q |
116 |
tcccaatgtaacgcaaatgattcctaagactcatagttaaagcctcacaatttttactggataaaatttgttgattgaacaatgtctg |
203 |
Q |
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| T |
36793151 |
tcccaatgtaacgcaaatgattcctaagactcatagctaaagcctcacaatttttactggataaaatttgttgattgaacaatgtctg |
36793064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 54168479 - 54168319
Alignment:
| Q |
35 |
acaccaacaacacaaaccatgtctaaaaatagaatccaatttaactgtaaaagaaatcaaccacaagttttaagcacagaatcccaatgtaacgcaaatg |
134 |
Q |
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| T |
54168479 |
acaccaacaaaacaaaccatgtctaaaaataaaatccaatttaactgtaaaagaaatcaaccacaagttttaagcacggaatcccaatgtaacgcaaatg |
54168380 |
T |
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| Q |
135 |
attcctaagactcatagttaaagcctcacaatttttactggataaaatttgttgattgaacaatgtctg |
203 |
Q |
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| T |
54168379 |
attcctaagactcatagctaa--------aatttttactggataaaatttgttgattgaacaatgtctg |
54168319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 41745002 - 41744854
Alignment:
| Q |
57 |
ctaaaaatagaatccaatttaactgtaaaagaaatcaaccacaa--gttttaagcacagaatcccaatgtaacgcaaatgattcctaagactcatagtta |
154 |
Q |
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||||||| |||||||||||||||| ||||||||||||| ||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| || || |
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| T |
41745002 |
ctaaaaacagaatccaatttaactataaaagaaatcaaacacaaaagttataagcacggaatcccaccgtaacgcaaatgattcctaagactcagagcta |
41744903 |
T |
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| Q |
155 |
aagcctcacaatttttactggataaaatttgttgattgaacaatgtctg |
203 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
41744902 |
aagcctcacaatctttgctggataaaatttgttgattgaactatgtctg |
41744854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 10985981 - 10985901
Alignment:
| Q |
123 |
gtaacgcaaatgattcctaagactcatagttaaagcctcacaatttttactggataaaatttgttgattgaacaatgtctg |
203 |
Q |
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||||| ||||||||| |||||| |||||| |||||||| |||||||| ||| ||||||||||||| ||||||| ||||||| |
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| T |
10985981 |
gtaacacaaatgattgctaagagtcatagctaaagcctgacaattttcactcgataaaatttgttaattgaactatgtctg |
10985901 |
T |
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