View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3137_low_11 (Length: 215)

Name: NF3137_low_11
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3137_low_11
NF3137_low_11
[»] chr8 (2 HSPs)
chr8 (20-72)||(42392570-42392623)
chr8 (132-181)||(10717054-10717103)
[»] chr7 (3 HSPs)
chr7 (129-196)||(29679319-29679386)
chr7 (132-197)||(31958672-31958737)
chr7 (129-166)||(20623146-20623183)
[»] chr2 (2 HSPs)
chr2 (129-195)||(7501376-7501442)
chr2 (130-166)||(37032879-37032915)
[»] chr4 (2 HSPs)
chr4 (132-181)||(56077471-56077520)
chr4 (132-166)||(34856007-34856041)
[»] chr6 (1 HSPs)
chr6 (132-195)||(21528881-21528944)
[»] chr3 (1 HSPs)
chr3 (132-195)||(51229550-51229613)
[»] chr1 (1 HSPs)
chr1 (136-197)||(24144602-24144663)


Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 42392623 - 42392570
Alignment:
Q  20 aggttaaaaatttgactctcatttttaaacataaacattaaca-ttgtttgttt 72  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  42392623 aggttaaaaattcgactctcatttttaaacataaacattaacatttgtttgttt 42392570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 10717103 - 10717054
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtc 181  Q
    ||||||||||||||||||||| |  |||||||||| ||| ||||||||||    
T  10717103 catagttttaaaaaccggaccggacatcgactcggtcaaagtactgggtc 10717054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 29679386 - 29679319
Alignment:
Q  129 gagcatagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggtc 196  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||||||  || |||| |||||||||    
T  29679386 gagcatagttttaaaaatcggaccggtgattgactcggccaaggtactgaatcactgggtcattggtc 29679319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 31958737 - 31958672
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggtcg 197  Q
    |||||||||||||| |||| | |||||||||||||| ||||| ||||| | |||| ||||||||||    
T  31958737 catagttttaaaaatcggatcggtgatcgactcggctaaggttctgggccactgggtcattggtcg 31958672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 20623146 - 20623183
Alignment:
Q  129 gagcatagttttaaaaaccggaccagtgatcgactcgg 166  Q
    |||||||||||||||||||||||| || ||||||||||    
T  20623146 gagcatagttttaaaaaccggaccggtcatcgactcgg 20623183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 7501376 - 7501442
Alignment:
Q  129 gagcatagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggt 195  Q
    ||||||||||||||||  |||||| ||||||||||||| || ||||||||||| | || ||||||||    
T  7501376 gagcatagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 7501442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 37032915 - 37032879
Alignment:
Q  130 agcatagttttaaaaaccggaccagtgatcgactcgg 166  Q
    ||||||||||||||||||||||| || ||||||||||    
T  37032915 agcatagttttaaaaaccggaccggtcatcgactcgg 37032879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 56077520 - 56077471
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtc 181  Q
    ||||||||||||||||||||| |||||||||||||  | |||||||||||    
T  56077520 catagttttaaaaaccggaccggtgatcgactcggtaagggtactgggtc 56077471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 34856007 - 34856041
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcgg 166  Q
    |||||||||||||||||||||||| ||||||||||    
T  34856007 catagttttaaaaaccggaccagtcatcgactcgg 34856041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 21528944 - 21528881
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggt 195  Q
    |||||||||||||  |||||| ||||||||||||| || ||||||||||| | || ||||||||    
T  21528944 catagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 21528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 51229613 - 51229550
Alignment:
Q  132 catagttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggt 195  Q
    |||||||||||||  |||||| ||||||||||||| || ||||||||||| | || ||||||||    
T  51229613 catagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 51229550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 24144602 - 24144663
Alignment:
Q  136 gttttaaaaaccggaccagtgatcgactcggccaaggtactgggtctctggatcattggtcg 197  Q
    ||||||||| ||||||||||||||||| ||| ||||| | |||||| || | ||||||||||    
T  24144602 gttttaaaacccggaccagtgatcgacccggtcaaggcattgggtcactaggtcattggtcg 24144663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University