View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3137_low_12 (Length: 215)
Name: NF3137_low_12
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 24718119 - 24717944
Alignment:
| Q |
11 |
tgagatgaatgctaggagatttcagaacaaccactcatctattcaaaacctcataagtcatattcttgtagagattaggcttagcagttctcgagtgaag |
110 |
Q |
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| T |
24718119 |
tgagatgaatgctaggagatttcagaacaaccactcatctattcaaaacctcataagtcatattcttgttgagattaagcttagcagttctcgagtgaag |
24718020 |
T |
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| Q |
111 |
gaaaatggtacttcttctaagatggacttctatgttactaggttccttggtgtctcttacaaacatgtcaggttgt |
186 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24718019 |
gaaaatggtaattcttctaagatggacttctatgttactaggttccttggcgtctcttacaaacatgtcaggttgt |
24717944 |
T |
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