View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3137_low_13 (Length: 214)
Name: NF3137_low_13
Description: NF3137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3137_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4599208 - 4599070
Alignment:
| Q |
1 |
actaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacga |
100 |
Q |
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| T |
4599208 |
actaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacga |
4599109 |
T |
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| Q |
101 |
ttatcataacagaaaatggtaatatttatattacattct |
139 |
Q |
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| T |
4599108 |
ttatcataacagaaaatggtaatatttatattacattct |
4599070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4623635 - 4623497
Alignment:
| Q |
1 |
actaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4623635 |
actaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaagggtattcaggacctactgttgtacacaaaggaaaagtataacaatcctacga |
4623536 |
T |
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| Q |
101 |
ttatcataacagaaaatggtaatatttatattacattct |
139 |
Q |
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| T |
4623535 |
ttatcataacagaaaatggtaatatttatattacattct |
4623497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 25016481 - 25016383
Alignment:
| Q |
26 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata |
124 |
Q |
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| T |
25016481 |
cttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata |
25016383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 25037744 - 25037649
Alignment:
| Q |
26 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
121 |
Q |
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| T |
25037744 |
cttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataaccgaaaatggta |
25037649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 18805377 - 18805481
Alignment:
| Q |
27 |
ttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatt |
126 |
Q |
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|||| ||||||||| ||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||| | |
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| T |
18805377 |
ttggctatatgtttatccaaaggggattcaagagctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatact |
18805476 |
T |
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| Q |
127 |
tatat |
131 |
Q |
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||||| |
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| T |
18805477 |
tatat |
18805481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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