View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3138_high_1 (Length: 569)

Name: NF3138_high_1
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3138_high_1
NF3138_high_1
[»] chr1 (7 HSPs)
chr1 (1-569)||(34478695-34479279)
chr1 (141-196)||(9955100-9955155)
chr1 (141-196)||(25146833-25146888)
chr1 (141-200)||(9327280-9327339)
chr1 (141-196)||(23528665-23528720)
chr1 (141-205)||(12513281-12513345)
chr1 (135-187)||(18891747-18891799)
[»] chr2 (5 HSPs)
chr2 (141-196)||(1404792-1404847)
chr2 (144-190)||(1690830-1690876)
chr2 (141-196)||(31238042-31238097)
chr2 (141-196)||(31578014-31578069)
chr2 (135-200)||(15516618-15516683)
[»] chr6 (10 HSPs)
chr6 (142-196)||(26053362-26053416)
chr6 (142-196)||(26073415-26073469)
chr6 (141-196)||(6943525-6943580)
chr6 (141-196)||(30912477-30912532)
chr6 (146-196)||(7223528-7223578)
chr6 (135-196)||(2912306-2912367)
chr6 (145-196)||(15528179-15528230)
chr6 (141-200)||(17250062-17250121)
chr6 (142-196)||(10509089-10509143)
chr6 (141-190)||(27233342-27233391)
[»] chr8 (8 HSPs)
chr8 (141-196)||(5922058-5922113)
chr8 (141-205)||(15294670-15294734)
chr8 (141-205)||(15475039-15475103)
chr8 (149-200)||(6292415-6292466)
chr8 (141-196)||(17647002-17647057)
chr8 (142-196)||(477113-477167)
chr8 (141-189)||(3094318-3094366)
chr8 (141-193)||(22910267-22910319)
[»] chr7 (6 HSPs)
chr7 (141-196)||(5058538-5058593)
chr7 (143-196)||(11326395-11326448)
chr7 (141-196)||(8346598-8346653)
chr7 (141-196)||(26281374-26281429)
chr7 (524-569)||(3333087-3333132)
chr7 (148-196)||(44944921-44944969)
[»] chr5 (8 HSPs)
chr5 (141-196)||(20923727-20923782)
chr5 (141-196)||(23172497-23172552)
chr5 (141-196)||(18051595-18051650)
chr5 (141-200)||(18843720-18843779)
chr5 (141-196)||(19042454-19042509)
chr5 (141-196)||(22645784-22645839)
chr5 (141-196)||(27340251-27340306)
chr5 (141-196)||(43234877-43234932)
[»] chr4 (4 HSPs)
chr4 (145-196)||(4156772-4156823)
chr4 (141-196)||(5362028-5362083)
chr4 (141-200)||(9770117-9770176)
chr4 (527-569)||(9596180-9596222)
[»] chr3 (5 HSPs)
chr3 (141-196)||(28745779-28745834)
chr3 (141-196)||(3449356-3449411)
chr3 (141-196)||(24649754-24649809)
chr3 (141-196)||(29067293-29067348)
chr3 (141-196)||(30727756-30727811)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 34478695 - 34479279
Alignment:
Q  1 ccattaattaacaagatgtggagcttgaactagtgctatatatcttgtttggacattttcactttttgggggtcaatattactagttcttaacatttgtg 100  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478695 ccattaattaacaagatgtggaacttgaactagggctatatatcttgtttggacattttcactttttgggggtcaatattactagttcttaacatttgtg 34478794  T
Q  101 tggctaatgcaacaagatcactatttacattatatgaatggttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34478795 tggctaatgcaacaagatcactatttacatgatatgaatcgttgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaaca 34478894  T
Q  201 cca-------ttacaataccttacccttgtttataaacacaattagattattgtcactgacatgcatgtttggct----tcattcga------ccctcgt 283  Q
     ||       ||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||  |     || |  ||      | |||||    
T  34478895 acaatgcttattacaattcg--acccttgtttataaacacaattagattattgtcactgacatgcatgtttaccccgtgtcttaggataataactctcgt 34478992  T
Q  284 agagacttcatttctatgcaggtttggcttcattcgacacacgtgtatgaatttgtagaatctgtgttgttgacaagttgtttgttatgtatgtcttgtc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34478993 agagacttcatttctatgcaggtttggcttcattcgacacacgtgtatgaatttgtagaatctgtgttgttgacaagttgtttgttatgtatgtcttgtt 34479092  T
Q  384 actctttatttatacacttaagtccacaagccttcaccttacatgcatttgatttatccttcatatttttatttataaaaatataaataattttttcttg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479093 actctttatttatacacttaagtccacaagccttcaccttacatgcatttgatttatccttcatatttttatttataaaaatataaataattttttcttg 34479192  T
Q  484 cttacaaacataaactaatataggtatctg-ttnnnnnnngccatctcatttatcatgcaatttatacttcatttttggatgagttc 569  Q
    | |||||||||||||||||||||||||| | ||       ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  34479193 cctacaaacataaactaatataggtatccgtttaaacaaagccatctcatttatcatgcaatttaaacttcagttttggatgagttc 34479279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 9955100 - 9955155
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| | |||||||| ||||||||| ||||||||    
T  9955100 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 9955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 25146833 - 25146888
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| ||||||||  ||||||| |||||||||| |||||||    
T  25146833 gttgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggatttt 25146888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 9327280 - 9327339
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    |||||||||| |||||||| |||||  | |||||||| |||||||||| |||||||||||    
T  9327280 gttgaaggtgtagaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaaca 9327339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 23528720 - 23528665
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||| ||||||||||| |||||| |  ||||||||||||||||| ||||||||    
T  23528720 gttgaagatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggatttt 23528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 12513345 - 12513281
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaacaccatt 205  Q
    ||||||| ||||||||||| |||||| | | ||| || |||||||||||||||||| ||| ||||    
T  12513345 gttgaagctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaacatt 12513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 18891747 - 18891799
Alignment:
Q  135 tgaatggttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagt 187  Q
    ||||| ||||||| |||| ||||||| |||| || ||||||||||||||||||    
T  18891747 tgaatcgttgaagatgaataaagtcaaaaaaatctaaattttaagatttaagt 18891799  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 1404847 - 1404792
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||||||||||||| | ||||||||  |||||||||||||||||    
T  1404847 gttgaaggtgaagaaagtcacaaaatcctaaattttagaatttaagtcgggatttt 1404792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 1690830 - 1690876
Alignment:
Q  144 gaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgg 190  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  1690830 gaaggtgaagaaagtcacaaaatcctaaattttaagatttaagtcgg 1690876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 31238042 - 31238097
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||  |||||| | | |||||| ||||||||||||||||||    
T  31238042 gttgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggatttt 31238097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 31578069 - 31578014
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||| || ||||||   ||||||||| |||||||||||||||||    
T  31578069 gttgaaggtgaagaaaatcgcaaaatcttaaattttaacatttaagtcgggatttt 31578014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 15516618 - 15516683
Alignment:
Q  135 tgaatggttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    ||||| |||||||||||| |||||| |||||| |  ||| ||||||||||||| | ||||||||||    
T  15516618 tgaattgttgaaggtgaataaagtcgcaaaatgctgaatattaagatttaagttgcgattttaaca 15516683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 26053362 - 26053416
Alignment:
Q  142 ttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||||| |||||| | | |||||||||||||||||||||||||    
T  26053362 ttgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggatttt 26053416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 26073415 - 26073469
Alignment:
Q  142 ttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||||| |||||| | | |||||||||||||||||||||||||    
T  26073415 ttgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggatttt 26073469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 6943525 - 6943580
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |  ||||||| ||||||||||||||||||    
T  6943525 gttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 6943580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 30912477 - 30912532
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| | |||||||| ||||||||| ||||||||    
T  30912477 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 30912532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 7223578 - 7223528
Alignment:
Q  146 aggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||| |||||| | |||||||| ||||||||||||||||||    
T  7223578 aggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 7223528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 2912306 - 2912367
Alignment:
Q  135 tgaatggttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||| ||||||| || |||||||  |||||| | |||||||||||||||||||||||||||    
T  2912306 tgaatcgttgaagatggagaaagttgcaaaatcctaaattttaagatttaagtcgggatttt 2912367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 15528179 - 15528230
Alignment:
Q  145 aaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||| |||||| |  ||||||| ||||||||||||||||||    
T  15528179 aaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 15528230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 17250121 - 17250062
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    ||||||||||||||||||  |||||| |   |||||| ||||||||||||||||||||||    
T  17250121 gttgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaaca 17250062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 10509089 - 10509143
Alignment:
Q  142 ttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||| ||||||||||||||||| |||  ||||||| |||||||||| |||||||    
T  10509089 ttgaatgtgaagaaagtcacaaatttctgaattttaggatttaagtctggatttt 10509143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 27233342 - 27233391
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgg 190  Q
    |||||||||||||||||||||||||| |   |||||| ||||||||||||    
T  27233342 gttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgg 27233391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 5922113 - 5922058
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||||||||||||| |   |||||| ||||||||||||||||||    
T  5922113 gttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggatttt 5922058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 15294734 - 15294670
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaacaccatt 205  Q
    |||||||||||| |||||| |||||| |  ||||||| |||||||||||||||||| ||| ||||    
T  15294734 gttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaacatt 15294670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 15475103 - 15475039
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaacaccatt 205  Q
    |||||||||||| |||||| |||||| |  ||||||| |||||||||||||||||| ||| ||||    
T  15475103 gttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaacatt 15475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 6292415 - 6292466
Alignment:
Q  149 tgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    |||| |||||||||||||   ||||||||||||||||||||| |||||||||    
T  6292415 tgaaaaaagtcacaaaatcttaaattttaagatttaagtcggtattttaaca 6292466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 17647057 - 17647002
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |  ||||||| |||||||||||| |||||    
T  17647057 gttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaatttt 17647002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 477113 - 477167
Alignment:
Q  142 ttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||||||||| |   |||||| |||||||||| |||||||    
T  477113 ttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcaggatttt 477167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 3094318 - 3094366
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcg 189  Q
    ||||||||||||||||||  |||||| |  |||||||||||||||||||    
T  3094318 gttgaaggtgaagaaagtagcaaaatcctgaattttaagatttaagtcg 3094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 22910267 - 22910319
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggat 193  Q
    |||||| ||||||||||||  ||||| | |||||||| |||||||||||||||    
T  22910267 gttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagtcgggat 22910319  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 5058593 - 5058538
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||| || ||||||||  ||||||| ||||||||||||||||||    
T  5058593 gttgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggatttt 5058538  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 11326448 - 11326395
Alignment:
Q  143 tgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||| |||||| | |||||||| ||||||||| ||||||||    
T  11326448 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 11326395  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 8346598 - 8346653
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||| ||| |||||||    
T  8346598 gttgaaggtgaagaaagtcgcaaaatcctaaattttaatatttaggtcaggatttt 8346653  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 26281374 - 26281429
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |  ||||||| |||||||||||| |||||    
T  26281374 gttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaatttt 26281429  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 3333087 - 3333132
Alignment:
Q  524 ccatctcatttatcatgcaatttatacttcatttttggatgagttc 569  Q
    ||||||||||| |||||||||||  |||| ||||||||||||||||    
T  3333087 ccatctcatttttcatgcaatttcaactttatttttggatgagttc 3333132  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 44944921 - 44944969
Alignment:
Q  148 gtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||| |||||| |  ||||||| ||||||||||||||||||    
T  44944921 gtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 44944969  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 20923782 - 20923727
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| ||||||||   |||||| ||||||||||||||||||    
T  20923782 gttgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggatttt 20923727  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 23172497 - 23172552
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||||    
T  23172497 gttgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 23172552  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 18051595 - 18051650
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||| ||||||||||| |||||| | | |||||| ||||||||||||||||||    
T  18051595 gttgaagttgaagaaagtcgcaaaatcctatattttaggatttaagtcgggatttt 18051650  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 18843779 - 18843720
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    ||||||||||||||||||| |||||| |  |||| || |||||||||||| |||||||||    
T  18843779 gttgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaaca 18843720  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 19042454 - 19042509
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||||||||||   ||||||||  |||||||| ||||||||    
T  19042454 gttgaaggtgaagaaagtcacaaaatcttaaattttagaatttaagttgggatttt 19042509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 22645784 - 22645839
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |   |||||| ||||||||||||||||||    
T  22645784 gttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggatttt 22645839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 27340251 - 27340306
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||| ||||||||||| ||||||   |||||||| ||||||||||||||||||    
T  27340251 gttgaagatgaagaaagtcgcaaaatcataaattttatgatttaagtcgggatttt 27340306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 43234932 - 43234877
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |  ||||||| ||||||||| ||||||||    
T  43234932 gttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggatttt 43234877  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 4156823 - 4156772
Alignment:
Q  145 aaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||| ||||||| ||||| | |||||||||||||||||||||||||||    
T  4156823 aaggtgaataaagtcataaaatcctaaattttaagatttaagtcgggatttt 4156772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 5362028 - 5362083
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||| ||||||||||| |||||| |  ||||||| ||||||||||||||||||    
T  5362028 gttgaagatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 5362083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 9770176 - 9770117
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggattttaaca 200  Q
    |||||||||||| ||||||||||||| | | ||||||  |||||||||| ||||||||||    
T  9770176 gttgaaggtgaaaaaagtcacaaaatcctagattttagaatttaagtcgagattttaaca 9770117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 9596180 - 9596222
Alignment:
Q  527 tctcatttatcatgcaatttatacttcatttttggatgagttc 569  Q
    |||||||| |||||||||||  |||||||||||||||||||||    
T  9596180 tctcatttttcatgcaatttcaacttcatttttggatgagttc 9596222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 28745834 - 28745779
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| | |||||||| ||||||| ||||||||||    
T  28745834 gttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggatttt 28745779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 3449356 - 3449411
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||| ||||||||| |||||| |  ||||||| ||||||||||||||||||    
T  3449356 gttgaaggtaaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 3449411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 24649754 - 24649809
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||| |||||| ||||| | | |||||| ||||||||||||||||||    
T  24649754 gttgaaggtgaagcaagtcaaaaaatcctagattttacgatttaagtcgggatttt 24649809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 29067348 - 29067293
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    ||||||||||||||||||| |||||| |  |||||||  |||||||||||||||||    
T  29067348 gttgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggatttt 29067293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 30727756 - 30727811
Alignment:
Q  141 gttgaaggtgaagaaagtcacaaaattccaaattttaagatttaagtcgggatttt 196  Q
    |||||||||||||||||||  |||||||   ||||||||||||||||| |||||||    
T  30727756 gttgaaggtgaagaaagtcgtaaaattcaggattttaagatttaagtcaggatttt 30727811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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