View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3138_high_13 (Length: 237)

Name: NF3138_high_13
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3138_high_13
NF3138_high_13
[»] chr6 (15 HSPs)
chr6 (46-221)||(6714503-6714677)
chr6 (65-157)||(10388230-10388322)
chr6 (75-146)||(30122818-30122889)
chr6 (64-169)||(16434804-16434908)
chr6 (64-170)||(67338-67444)
chr6 (76-166)||(67615-67705)
chr6 (75-169)||(30847624-30847718)
chr6 (76-171)||(10388496-10388591)
chr6 (90-165)||(6169375-6169450)
chr6 (83-166)||(9530527-9530610)
chr6 (75-126)||(3687867-3687918)
chr6 (80-146)||(35072198-35072264)
chr6 (140-173)||(2182455-2182488)
chr6 (67-147)||(2121883-2121963)
chr6 (94-166)||(3687627-3687699)
[»] chr7 (23 HSPs)
chr7 (75-170)||(26073418-26073513)
chr7 (75-170)||(26097205-26097300)
chr7 (75-171)||(32047231-32047327)
chr7 (75-170)||(33189881-33189976)
chr7 (64-170)||(35315841-35315947)
chr7 (75-165)||(35316117-35316207)
chr7 (89-174)||(7511074-7511159)
chr7 (83-170)||(21297712-21297799)
chr7 (75-170)||(36642606-36642701)
chr7 (64-170)||(33190145-33190251)
chr7 (75-171)||(26073141-26073237)
chr7 (75-171)||(26096928-26097024)
chr7 (62-160)||(5964230-5964328)
chr7 (75-168)||(3248298-3248391)
chr7 (75-144)||(25658412-25658481)
chr7 (75-140)||(32056867-32056932)
chr7 (77-157)||(47334-47414)
chr7 (82-169)||(5963990-5964077)
chr7 (62-146)||(32056649-32056732)
chr7 (64-126)||(527461-527523)
chr7 (65-144)||(40089031-40089111)
chr7 (65-126)||(3248436-3248497)
chr7 (75-171)||(42709892-42709988)
[»] chr8 (16 HSPs)
chr8 (75-170)||(5074526-5074621)
chr8 (64-142)||(23488849-23488927)
chr8 (65-170)||(23488960-23489065)
chr8 (78-169)||(11732593-11732684)
chr8 (65-171)||(16997091-16997197)
chr8 (75-170)||(34153485-34153579)
chr8 (75-169)||(7905633-7905727)
chr8 (75-144)||(41480781-41480850)
chr8 (65-169)||(42950606-42950710)
chr8 (64-146)||(38225455-38225537)
chr8 (64-169)||(42950341-42950446)
chr8 (75-158)||(42026954-42027037)
chr8 (75-145)||(38225707-38225777)
chr8 (65-147)||(42027208-42027290)
chr8 (77-126)||(13577791-13577840)
chr8 (65-157)||(5074264-5074355)
[»] chr4 (24 HSPs)
chr4 (75-169)||(4872546-4872640)
chr4 (65-170)||(51103629-51103734)
chr4 (75-169)||(4892385-4892479)
chr4 (75-157)||(51103376-51103458)
chr4 (64-172)||(4892647-4892755)
chr4 (75-170)||(39864089-39864184)
chr4 (64-169)||(35251649-35251754)
chr4 (75-175)||(22886695-22886795)
chr4 (75-175)||(22938359-22938459)
chr4 (87-146)||(35004495-35004554)
chr4 (64-176)||(22886410-22886525)
chr4 (64-176)||(22938074-22938189)
chr4 (75-168)||(36825072-36825165)
chr4 (75-132)||(44137403-44137460)
chr4 (75-116)||(45302598-45302639)
chr4 (90-142)||(43049385-43049437)
chr4 (65-169)||(45302323-45302427)
chr4 (89-146)||(40681720-40681777)
chr4 (79-150)||(33614396-33614467)
chr4 (95-138)||(42077056-42077099)
chr4 (75-142)||(54511587-54511654)
chr4 (114-144)||(5808241-5808271)
chr4 (75-146)||(30808387-30808460)
chr4 (80-172)||(4872824-4872916)
[»] chr3 (25 HSPs)
chr3 (64-170)||(33140540-33140646)
chr3 (64-169)||(43804151-43804256)
chr3 (75-170)||(46164093-46164188)
chr3 (64-169)||(46163819-46163924)
chr3 (75-170)||(36012688-36012783)
chr3 (65-170)||(32808147-32808252)
chr3 (90-169)||(12088989-12089068)
chr3 (75-174)||(55213961-55214059)
chr3 (64-146)||(26244881-26244963)
chr3 (75-146)||(26121974-26122045)
chr3 (75-155)||(7565752-7565832)
chr3 (75-169)||(45708715-45708809)
chr3 (75-169)||(32808427-32808523)
chr3 (75-146)||(33140299-33140370)
chr3 (75-170)||(39840635-39840730)
chr3 (64-146)||(26244184-26244266)
chr3 (75-132)||(2051504-2051561)
chr3 (75-171)||(55447190-55447286)
chr3 (75-174)||(2051741-2051840)
chr3 (64-162)||(3157668-3157766)
chr3 (75-144)||(3157934-3158004)
chr3 (77-147)||(12015052-12015122)
chr3 (75-140)||(7565620-7565684)
chr3 (78-171)||(39840903-39840996)
chr3 (75-143)||(43031396-43031464)
[»] chr2 (11 HSPs)
chr2 (69-172)||(26407670-26407773)
chr2 (65-168)||(36937767-36937870)
chr2 (64-157)||(29469527-29469620)
chr2 (93-169)||(30786444-30786520)
chr2 (75-171)||(36937502-36937596)
chr2 (75-146)||(26407424-26407495)
chr2 (90-169)||(18143998-18144080)
chr2 (75-144)||(29166979-29167048)
chr2 (75-132)||(32013986-32014043)
chr2 (80-176)||(22191527-22191623)
chr2 (113-169)||(29166682-29166738)
[»] chr5 (8 HSPs)
chr5 (65-144)||(22843767-22843846)
chr5 (75-169)||(17990743-17990837)
chr5 (89-169)||(8999818-8999898)
chr5 (75-169)||(36151006-36151100)
chr5 (75-168)||(13932834-13932927)
chr5 (102-170)||(11275823-11275891)
chr5 (75-141)||(22843904-22843969)
chr5 (75-172)||(8840028-8840125)
[»] chr1 (20 HSPs)
chr1 (75-170)||(7481196-7481291)
chr1 (75-146)||(27133842-27133913)
chr1 (75-169)||(23329296-23329390)
chr1 (75-128)||(4066923-4066976)
chr1 (105-166)||(38208522-38208583)
chr1 (64-172)||(4067143-4067249)
chr1 (93-169)||(49784816-49784892)
chr1 (75-174)||(28504683-28504782)
chr1 (75-170)||(33321310-33321405)
chr1 (75-173)||(7481031-7481128)
chr1 (75-133)||(33321071-33321129)
chr1 (80-169)||(2464189-2464278)
chr1 (64-138)||(27134116-27134190)
chr1 (64-146)||(38208279-38208361)
chr1 (92-165)||(34535586-34535659)
chr1 (75-168)||(46410831-46410924)
chr1 (65-169)||(6219602-6219706)
chr1 (65-169)||(20993854-20993958)
chr1 (64-146)||(49784544-49784624)
chr1 (78-132)||(15395207-15395261)
[»] scaffold0024 (2 HSPs)
scaffold0024 (75-176)||(70837-70937)
scaffold0024 (75-143)||(70614-70682)
[»] scaffold0022 (1 HSPs)
scaffold0022 (75-146)||(122549-122620)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 6714503 - 6714677
Alignment:
Q  46 caattacatgactatgaactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagac 145  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6714503 caattacatgactatgaactgagaaataattgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagac 6714602  T
Q  146 aaagatcaatttgatggtttactcaataattgtgcttcaattgcacacatgacaactgacaaattaggcacctttg 221  Q
    || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6714603 aatgatc-atttgatggtttactcaataattatgcttcaattgcacacatgacaactgacaaattaggcacctttg 6714677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 10388322 - 10388230
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 157  Q
    ||||||| | || |||||||||||||||||||||| ||||||||| |||||||||||| ||| | ||||||||| ||||||||||||||||||    
T  10388322 tgagaaacatttaacaaagacagagaccattttgagttattaatagagtcagagaccagtttaaaaatttggtataaagacaaagatcaattt 10388230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 30122818 - 30122889
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||    
T  30122818 ttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagaca 30122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 16434908 - 16434804
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||||  |||||||||||||| |||||||| | ||||||||| |||||  ||||||||||||||||||||||||||| | |||  |||||||||||    
T  16434908 ctgagaaatttttgacaaagacagataccatttttagttattaatagagtcat-gaccaatttgagaatttggtacaaagagagagactaatttgatggt 16434810  T
Q  164 ttactc 169  Q
    ||||||    
T  16434809 ttactc 16434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 67444 - 67338
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||||  |||| ||| |||| ||||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||  || ||||||| || |    
T  67444 ctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggtgat 67345  T
Q  164 ttactca 170  Q
    |||||||    
T  67344 ttactca 67338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 67615 - 67705
Alignment:
Q  76 tgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 166  Q
    |||||||||| ||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||   || |||||||||| ||||    
T  67615 tgacaaagacggagactattttgagttattaataaaatcagagaccaatttgaaaatttggtacaaagactgggaccaatttgatgattta 67705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 30847718 - 30847624
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||||| || ||||||||| ||||||||||| | ||| |||||||||  ||||||||||| ||||||| ||| |||||| |||||||||||    
T  30847718 ttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaagaatttggtataaagacatagaccaatttaatggtttactc 30847624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 10388496 - 10388591
Alignment:
Q  76 tgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    |||||||||||  || |||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||||  ||| |||||| || ||||||||||    
T  10388496 tgacaaagacatggatcattttgatttattaatagagttagaaaccaatttgagaatatggtacaaagacggagaccaatttaatagtttactcaa 10388591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 6169450 - 6169375
Alignment:
Q  90 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 165  Q
    |||||||||| |||||||||||||||  |||||| |||||||||| ||| ||||| | ||| ||||||||||||||    
T  6169450 accattttgagttattaataaagtcattgaccaaattgagaatttagtataaagatagagaccaatttgatggttt 6169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 9530610 - 9530527
Alignment:
Q  83 gacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 166  Q
    ||||||||| | |||||| |||||||||||| |||||| |||||||||||    |||||||||| ||| |||||| ||||||||    
T  9530610 gacagagactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagacagagaccaatttaatggttta 9530527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 3687867 - 3687918
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 126  Q
    |||||||| |||||||||||||||| ||| ||||||| |||| |||||||||    
T  3687867 ttgacaaaaacagagaccattttgagttactaataaactcagggaccaattt 3687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 35072264 - 35072198
Alignment:
Q  80 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    ||||||| ||| | |||||| ||||||||| |||||| || ||| |||| |||||||||||||||||    
T  35072264 aaagacatagatcgttttgatttattaatagagtcagtgatcaaattgaaaatttggtacaaagaca 35072198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 2182455 - 2182488
Alignment:
Q  140 aaagacaaagatcaatttgatggtttactcaata 173  Q
    ||||||| ||||||||||||||||||||||||||    
T  2182455 aaagacatagatcaatttgatggtttactcaata 2182488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 2121963 - 2121883
Alignment:
Q  67 agaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 147  Q
    ||||||| || ||| | |||||||| ||||| | |||||||||||||||   | ||||||||||||| |||||||| ||||    
T  2121963 agaaatatttaacataaacagagactattttaagttattaataaagtcaatcatcaatttgagaattaggtacaaaaacaa 2121883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 3687699 - 3687627
Alignment:
Q  94 ttttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 166  Q
    |||||| ||||||| | |||||  || ||||||||||||||| |||||||||| ||| |||||| ||| ||||    
T  3687699 ttttgagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaatttaatgattta 3687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 26073418 - 26073513
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||  || |||||||||||||||||||    
T  26073418 ttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactca 26073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 26097205 - 26097300
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||  || |||||||||||||||||||    
T  26097205 ttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactca 26097300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 32047327 - 32047231
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |  || ||||||| || |||||||||    
T  32047327 ttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatttactcaa 32047231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 33189976 - 33189881
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||| ||||||| | |||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||| ||| || ||||||||||||||||    
T  33189976 ttgataaagacaaataccattttgagttattaatagagtcaaagaccaatttgagaagttggtacaaagacagagaccagtttgatggtttactca 33189881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 35315947 - 35315841
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | |||||||||||| |||| ||||||| ||||||||| |||||| |||| | |||| |||||||||||||| || |||| |||||| ||||    
T  35315947 ctgagaaacatttgacaaagacatagactattttgagttattaatagagtcagggaccgaattgacaatttggtacaaaggcagagattaatttggtggt 35315848  T
Q  164 ttactca 170  Q
    |||||||    
T  35315847 ttactca 35315841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 35316117 - 35316207
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 165  Q
    |||| |||||||| ||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| |||  |||||||| ||||    
T  35316117 ttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaagaatttggtacaaagacagagactaatttgatagttt 35316207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 7511159 - 7511074
Alignment:
Q  89 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    ||||||||||| ||||||| | |||||  ||||||||||||||||||||||||||| |  || |||||||||||||||||||||||    
T  7511159 gaccattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttgatggtttactcaataa 7511074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 21297799 - 21297712
Alignment:
Q  83 gacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||| |||| ||||||| ||||||||| |||||||||| || || |||||||||||||||||||  || |||||||||||||||||||    
T  21297799 gacaaagactattttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttgatggtttactca 21297712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 36642701 - 36642606
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||||||  || |||| ||||||||| |||||| ||||||||||| ||||||||||||||| | ||| |||||| ||| ||||||||    
T  36642701 ttgacaaagacagagatgatgttgagttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgatttactca 36642606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 33190145 - 33190251
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | || |||||||||||||||||||||||||||||||| |||||| || ||| |||| |||||| || ||||||| | | ||||| ||| ||    
T  33190145 ctgagaaacatttaacaaagacagagaccattttgaattattaatagagtcagggatcaaattgaaaatttgatataaagacataaaccaattcgatagt 33190244  T
Q  164 ttactca 170  Q
    |||||||    
T  33190245 ttactca 33190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 26073237 - 26073141
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    |||||||||| || ||||||||||| ||||||||| ||| ||||  |||||||| |||||||||||||||||   | ||||||| ||||||||||||    
T  26073237 ttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtggtttactcaa 26073141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 26097024 - 26096928
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    |||||||||| || ||||||||||| ||||||||| ||| ||||  |||||||| |||||||||||||||||   | ||||||| ||||||||||||    
T  26097024 ttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtggtttactcaa 26096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 5964230 - 5964328
Alignment:
Q  62 aactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 160  Q
    ||||||||||   |||| |||||||| ||||||||||| ||||||| | |||| |||||||| |||||||||||||| ||||| |  ||||||||||||    
T  5964230 aactgagaaacgtttgataaagacagtgaccattttgagttattaaaagagtcggagaccaaattgagaatttggtataaagatatggatcaatttgat 5964328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 3248391 - 3248298
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 168  Q
    |||||||||||||| || |||||||  |||||||||||||||| || |||||||||    | |||||||||||||| |||||| ||||||||||    
T  3248391 ttgacaaagacagaaactattttgagatattaataaagtcagatactaatttgagagcgggttacaaagacaaagaccaatttaatggtttact 3248298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 25658481 - 25658412
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    |||||||| |||  ||||||||||| ||||||| | |||||| |||||||||||||||||||||||||||    
T  25658481 ttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttgagaatttggtacaaaga 25658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 32056867 - 32056932
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtaca 140  Q
    |||||||||||||| |||||||| | |||||||||||||| | |||||| ||||||||||||||||    
T  32056867 ttgacaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtaca 32056932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 47334 - 47414
Alignment:
Q  77 gacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 157  Q
    |||||||||||||| |||||||| ||||||||| || || |||||||||| | ||||||||||||||| | ||| ||||||    
T  47334 gacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaattt 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 5964077 - 5963990
Alignment:
Q  82 agacagagaccat-tttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||| |||||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||| || | |||| |||||||||||||    
T  5964077 agacagggaccatgtttgagttattaatagagtcagagactaaattgagaatttggtacaaagac-aacaccaatctgatggtttactc 5963990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 32056732 - 32056649
Alignment:
Q  62 aactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||  |||||||||||| |||||||||| | ||||||||| ||| || |||||| |||| |||||||||||||||||    
T  32056732 aactgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaagaca 32056649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 527523 - 527461
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 126  Q
    |||||||| | ||||||||||||||||| || |||||||||||||| || |||||||||||||    
T  527523 ctgagaaacatttgacaaagacagagacaatcttgaattattaatatagacagagaccaattt 527461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 40089031 - 40089111
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaat-aaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    ||||||| | |||||||||||||| || |||||||||||||||| ||||||||    |||||| | |||||||||||||||    
T  40089031 tgagaaacatttgacaaagacagaaactattttgaattattaataaaagtcaggattcaatttaaaaatttggtacaaaga 40089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 3248436 - 3248497
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 126  Q
    ||||||||  ||||||||||||||||| |||||||  |||||||| ||||| |||| |||||    
T  3248436 tgagaaatgtttgacaaagacagagactattttgacatattaatatagtcaaagactaattt 3248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 42709988 - 42709892
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    ||||||||||||  ||| ||||| || |||||||| |||| |||||  ||||||||||    ||||||||||  || ||||||||| ||||||||||    
T  42709988 ttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttgatagtttactcaa 42709892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 5074526 - 5074621
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||| ||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  5074526 ttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatttggtacaaagatatggatcaatttgatggtttactca 5074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 23488849 - 23488927
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 142  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  23488849 ctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggttcaaa 23488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 23488960 - 23489065
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | ||||||||||||  ||||||||||| ||||| ||| |||||  |||||||||||||||||||||||||||||| |||||||||| || ||    
T  23488960 tgagaaacatttgacaaagacaatgaccattttgagttattcatagagtcatggaccaatttgagaatttggtacaaagacaaggatcaatttggtgatt 23489059  T
Q  165 tactca 170  Q
    ||||||    
T  23489060 tactca 23489065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 11732684 - 11732593
Alignment:
Q  78 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||   |  |||||||||||||||||    
T  11732684 acaatgacagagaccattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaagacatgtactaatttgatggtttactc 11732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 16997197 - 16997091
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | |||||||||||| |||||||||||| ||||||||| ||| ||  ||||| |||| ||||||||||||||| |  || |||||||||||||    
T  16997197 tgagaaacatttgacaaagacaaagaccattttgagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttgatggtt 16997098  T
Q  165 tactcaa 171  Q
    |||||||    
T  16997097 tactcaa 16997091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 34153485 - 34153579
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||||||||||| | | |||||||| ||||||||| ||||| |||||||||||| ||||||||||||| |||  |||||||||| |||||||||||    
T  34153485 ttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttgataatttggtacaaaaacagtgatcaatttggtggtttactca 34153579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 7905727 - 7905633
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| ||| ||||||| |||||||||||||||||   |  |||||||||||||||||    
T  7905727 ttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtacaaagacaggaagtaatttgatggtttactc 7905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 41480781 - 41480850
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    |||||||||||||  |||||||||| |||||||||||||||| || |||| |||||||||||||||||||    
T  41480781 ttgacaaagacagtaaccattttgagttattaataaagtcagggaacaatatgagaatttggtacaaaga 41480850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 42950606 - 42950710
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||||  ||||||||||||  ||||||||||| ||||||||| ||||||||||| |||| | |||||  |||||||||| |||  ||| ||||||||    
T  42950606 tgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaatttaatacaaagacatagactaatctgatggtt 42950705  T
Q  165 tactc 169  Q
    |||||    
T  42950706 tactc 42950710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 38225537 - 38225455
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||| ||||| |||||||| ||  |||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||    
T  38225537 ctgaaaaatatttgacaaataccaagaccattttgagttattaatagagtaagggaccaaattgagaatttggtacaaagaca 38225455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 42950446 - 42950341
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | ||||||| | || ||| |||||||| ||||||||||||| || || ||| |||| |||||| |||||||||||  | ||||||||||||    
T  42950446 ctgagaaacatttgacaacggcatagatcattttgagttattaataaagttagggatcaaattgaaaatttgatacaaagacaagaaccaatttgatggt 42950347  T
Q  164 ttactc 169  Q
    ||||||    
T  42950346 ttactc 42950341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 42027037 - 42026954
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttg 158  Q
    |||||||||||  | | |||||||| |||||||||||||| | ||||||||| | ||||||||| |||||||| ||||||||||    
T  42027037 ttgacaaagacgaaaaacattttgagttattaataaagtcggggaccaatttaaaaatttggtaaaaagacaatgatcaatttg 42026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 38225707 - 38225777
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagac 145  Q
    ||||||||||||   |||||||| ||||||||||| |||||| ||||||||||| ||||||||| ||||||    
T  38225707 ttgacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggtataaagac 38225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 42027208 - 42027290
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 147  Q
    ||||||| | ||||||||||||   |||||||| | ||||||||| |||||||||||||||| ||||||| ||| ||||||||    
T  42027208 tgagaaagatttgacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagacaa 42027290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 13577791 - 13577840
Alignment:
Q  77 gacaaagacagagaccattttgaattattaataaagtcagagaccaattt 126  Q
    |||||||| || ||||||||||||||||||| ||||||||  ||||||||    
T  13577791 gacaaagatagtgaccattttgaattattaacaaagtcagtaaccaattt 13577840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 5074355 - 5074264
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 157  Q
    ||||||| | ||||||||||||||||  ||||||| ||||| ||| ||| || ||||||||| | |||||| ||||||||   ||||||||||    
T  5074355 tgagaaacatttgacaaagacagagattattttgagttattcatagagttag-gaccaatttaaaaatttgatacaaagatggagatcaattt 5074264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 4872640 - 4872546
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||||||||||| |||||||| ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  4872640 ttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaatttggtacaaagacaaagatcagtttggtggtttactc 4872546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 51103629 - 51103734
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||||  |||| |||||||||||| ||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| |  || |||||||||||||    
T  51103629 tgagaaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttgatggtt 51103728  T
Q  165 tactca 170  Q
    ||||||    
T  51103729 tactca 51103734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 4892479 - 4892385
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||||||||  |||||||||| ||||||||| |||| ||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||    
T  4892479 ttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaagaatttggtacaaagacagagaccaatttggtggtttactc 4892385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 51103458 - 51103376
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 157  Q
    ||||||||| ||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  51103458 ttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaattt 51103376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 4892647 - 4892755
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | || ||||||||| ||||||||||||||| | |||| |||| | |||||| |||||||||||||||||||| | | |  |||||||||||    
T  4892647 ctgagaaacatttcacaaagacaaagaccattttgaattgtaaatagagtctgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggt 4892746  T
Q  164 ttactcaat 172  Q
    |||||||||    
T  4892747 ttactcaat 4892755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 39864184 - 39864089
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||| || |||||||| ||||||||| |||| | ||||||||| | ||||||||||||||||| ||| |||||| ||| ||||||||    
T  39864184 ttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagaccaatttaatgatttactca 39864089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 35251649 - 35251754
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | |||| ||||||| |||||||| | | ||||||||| ||| || |||||| ||||||||||||||||||||||  || ||||||| ||||    
T  35251649 ctgagaaacatttgagaaagacaaagaccattataagttattaatagagttagggaccaaattgagaatttggtacaaagacagggaccaatttggtggt 35251748  T
Q  164 ttactc 169  Q
    ||||||    
T  35251749 ttactc 35251754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 22886695 - 22886795
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    |||||||||| ||| || ||||||||||||||||| ||||| |||||||||| | |||||| |||||||| ||| | ||||| | || ||||||||||||    
T  22886695 ttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagataaataccaattcggtgatttactcaataa 22886794  T
Q  175 t 175  Q
    |    
T  22886795 t 22886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 22938359 - 22938459
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    |||||||||| ||| || ||||||||||||||||| ||||| |||||||||| | |||||| |||||||| ||| | ||||| | || ||||||||||||    
T  22938359 ttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagataaataccaattcggtgatttactcaataa 22938458  T
Q  175 t 175  Q
    |    
T  22938459 t 22938459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 35004554 - 35004495
Alignment:
Q  87 gagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    ||||| ||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  35004554 gagactattttgagttattaatagagtcagggaccaatatgagaatttggtacaaagaca 35004495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 22886525 - 22886410
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttga---attattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 160  Q
    |||||||| | ||||||||||||   || |||||||   |||||||||||||||||  |||||||| ||||||||||||||| |||   | |||||||||    
T  22886525 ctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgat 22886426  T
Q  161 ggtttactcaataatt 176  Q
    | ||||||||| ||||    
T  22886425 gatttactcaaaaatt 22886410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 22938189 - 22938074
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttga---attattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 160  Q
    |||||||| | ||||||||||||   || |||||||   |||||||||||||||||  |||||||| ||||||||||||||| |||   | |||||||||    
T  22938189 ctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgat 22938090  T
Q  161 ggtttactcaataatt 176  Q
    | ||||||||| ||||    
T  22938089 gatttactcaaaaatt 22938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 36825072 - 36825165
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 168  Q
    |||| ||||| | ||| |||||||| ||||||||| |||||  |||||| | || ||||||||||||| ||||| | |||||||||||||||||    
T  36825072 ttgataaagatatagatcattttgagttattaatagagtcaatgaccaaatagaaaatttggtacaaatacaaataccaatttgatggtttact 36825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 44137460 - 44137403
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 132  Q
    |||||||||||||| || |||||||| |||||||| |||||||||| |||||||||||    
T  44137460 ttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaat 44137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 45302598 - 45302639
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcag 116  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  45302598 ttgacaaagacagaaaccattttgaattattaataaagtcag 45302639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 43049385 - 43049437
Alignment:
Q  90 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 142  Q
    |||||||||||||||||||| | ||||||| |||||| |||||||||||||||    
T  43049385 accattttgaattattaatagactcagagatcaatttaagaatttggtacaaa 43049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 45302427 - 45302323
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | || |||||||||| ||  |||||||||||||| || |||||| || ||| || |||||||| || ||||| |  ||||||||||||||||    
T  45302427 tgagaaacatttcacaaagacagtgaatattttgaattattagtagagtcagggatcaaattaagaatttgatataaagagagggatcaatttgatggtt 45302328  T
Q  165 tactc 169  Q
    |||||    
T  45302327 tactc 45302323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 40681720 - 40681777
Alignment:
Q  89 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    ||||||||| | ||||||||| | |||| |||||||||||||||| ||||||||||||    
T  40681720 gaccattttaagttattaatagaatcagggaccaatttgagaattcggtacaaagaca 40681777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 33614396 - 33614467
Alignment:
Q  79 caaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaaga 150  Q
    ||||||||||||| | |||||| ||||||||||||||  ||| ||||||||| | |  ||||||||||||||    
T  33614396 caaagacagagactagtttgaaatattaataaagtcatggactaatttgagagtctcctacaaagacaaaga 33614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 42077099 - 42077056
Alignment:
Q  95 tttgaattattaataaagtcagagaccaatttgagaatttggta 138  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  42077099 tttgagttattaataaagtcaaggaccaatttgagaatttggta 42077056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 54511587 - 54511654
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 142  Q
    ||||| |||| | |||||||||||||||||||||| | ||   ||||||||| |||||||||||||||    
T  54511587 ttgactaagatatagaccattttgaattattaatagattcgtggaccaatttaagaatttggtacaaa 54511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 5808241 - 5808271
Alignment:
Q  114 cagagaccaatttgagaatttggtacaaaga 144  Q
    |||||||||||||||||||||||||||||||    
T  5808241 cagagaccaatttgagaatttggtacaaaga 5808271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 30808460 - 30808387
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaata--aagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||   || ||||||||||||||||||  |||| ||||| |||||| | |||||||||||||||||    
T  30808460 ttgacaaagacgtggaacattttgaattattaatataaagttagagatcaatttaaaaatttggtacaaagaca 30808387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 4872824 - 4872916
Alignment:
Q  80 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaat 172  Q
    ||||||||||| |||||| | ||||||||| || || | | ||| || |||||||||||||||||||   |  |||||||||||||| |||||    
T  4872824 aaagacagagatcattttaagttattaatagaggcaaaaatcaaatttagaatttggtacaaagacaggtacaaatttgatggtttattcaat 4872916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 33140540 - 33140646
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||||  ||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||  || |    
T  33140540 ctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttgagcatttggtacaaagacaaggaccaatttagtgat 33140639  T
Q  164 ttactca 170  Q
    |||||||    
T  33140640 ttactca 33140646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 43804151 - 43804256
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | ||||||||||||  ||||||||||||||||||||||||| |  ||||||||| | |||||||| |||||||||||| |||||||||| |    
T  43804151 ctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaaaaatttggtgcaaagacaaagaccaatttgatgat 43804250  T
Q  164 ttactc 169  Q
    ||||||    
T  43804251 ttactc 43804256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 46164093 - 46164188
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||| ||||||||||  |  ||||||| |||||||||||    
T  46164093 ttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgagaatttgatacaaagacagggtccaatttggtggtttactca 46164188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 46163924 - 46163819
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| ||||   |||||| ||||||||||||||||||||||  || ||| ||||||||    
T  46163924 ctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaagacagggaccaacttgatggt 46163825  T
Q  164 ttactc 169  Q
    ||||||    
T  46163824 ttactc 46163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 36012688 - 36012783
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||| |||||||| ||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||  || ||||||||    
T  36012688 ttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatttactca 36012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 32808252 - 32808147
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | |||||||||||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||  |||||    |||| |||||||||||||    
T  32808252 tgagaaacatttgacaaagacagagatcattttgagttattaatagagtcagggaccaatttgaaaatttgacacaaaagagaagaccaatttgatggtt 32808153  T
Q  165 tactca 170  Q
    ||||||    
T  32808152 tactca 32808147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 12089068 - 12088989
Alignment:
Q  90 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||| |||||| ||| |||||||    
T  12089068 accattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaaaacatagaccaatttaatgatttactc 12088989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 55214059 - 55213961
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    |||||||||||   ||||||||||| ||||||||| | ||||| |||||||||| ||||||||||||||||| |||  |||||||| |||||||||||||    
T  55214059 ttgacaaagaccttgaccattttgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagactaatttgat-gtttactcaataa 55213961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 26244963 - 26244881
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||| ||||| ||||||||||||||||||||||||  ||||||||| |||||  ||||||||| | |||||||||||||||||    
T  26244963 ctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaaaaatttggtacaaagaca 26244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 26122045 - 26121974
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||||| |||||||||  ||||||||| |||||  ||||||||||||||||||||| |||||||    
T  26122045 ttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttgagaatttggtataaagaca 26121974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 7565752 - 7565832
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaat 155  Q
    |||||||||| |  ||||||||||| ||||||||||||||  ||||||| |||||||||||||||| ||| ||||| ||||    
T  7565752 ttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagataaagaccaat 7565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 45708715 - 45708809
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||||||||||| ||||||||| ||||||| | |||||| ||||||||| | | ||| |||||||||||  || |||||| ||| |||||||    
T  45708715 ttgacaaagacagaggccattttgagttattaacatagtcagtgaccaatttaaaattttagtacaaagacatggaccaatttaatgatttactc 45708809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 32808427 - 32808523
Alignment:
Q  75 ttgacaaagacagagaccattttgaattat--taataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||||| |||||||||||||| ||||  ||||| || ||  ||||||||||| | ||||||||||||||| ||| ||||||| || |||||||    
T  32808427 ttgacaaagatagagaccattttgagttatcataatagagccaaggaccaatttgaaattttggtacaaagacagagaccaatttggtgatttactc 32808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 33140370 - 33140299
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||| | | |||||||| ||||||||| ||||||| || ||||| |||||||| ||||||||||    
T  33140370 ttgacaaagacaaaaatcattttgagttattaatagagtcagaaactaatttaagaatttgatacaaagaca 33140299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 39840730 - 39840635
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||||||| |||  ||| |||||||| |||||||| |||||||||| |||||||||||    ||||||||||  ||||||||||||  ||||||||    
T  39840730 ttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttgataatttactca 39840635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 26244266 - 26244184
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||| | | ||||||||||||||||||||||  ||||||||| |||||  || |||||| | |||||| ||||||||||    
T  26244266 ctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaaaaatttgttacaaagaca 26244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 2051561 - 2051504
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 132  Q
    |||||||||| |  ||||||||||| ||||||| | ||||||||||||||||||||||    
T  2051561 ttgacaaagataaggaccattttgagttattaacagagtcagagaccaatttgagaat 2051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 55447190 - 55447286
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    |||| |||||||||||| ||||| || |||||| | ||||||||||  ||||||||||    |||||||||||||| ||||||  ||||||| ||||    
T  55447190 ttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagacaaagaccaatttagtggtttaatcaa 55447286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 2051741 - 2051840
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    |||| ||| |||| ||| ||||||| |||||||||||||||  ||||||||| | |||||| |||||| ||  ||| ||||||  || ||||||||||||    
T  2051741 ttgataaaaacagggactattttgagttattaataaagtcatggaccaatttaaaaatttgatacaaaaacggagaccaatttagtgatttactcaataa 2051840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 3157766 - 3157668
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatgg 162  Q
    |||||||| | |||||||||| |   |||||||| ||||||||||| ||| |  ||| ||  |||||||||||||||||||||| || ||| |||||||    
T  3157766 ctgagaaacatttgacaaagaaaagaaccattttaaattattaatagagttatggacgaaactgagaatttggtacaaagacaaggaccaacttgatgg 3157668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 3157934 - 3158004
Alignment:
Q  75 ttgacaaagacagagaccattttgaa-ttattaataaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    ||||||||||||||||||||||| || ||||||||| | |||  ||  |||||||||||||| ||||||||    
T  3157934 ttgacaaagacagagaccattttaaatttattaatagaatcatggattaatttgagaatttgatacaaaga 3158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 12015052 - 12015122
Alignment:
Q  77 gacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 147  Q
    |||||| | |||||| ||||||| ||||||||| |||  | || ||| |||||||||||||||||||||||    
T  12015052 gacaaaaatagagactattttgagttattaatagagttggggatcaaattgagaatttggtacaaagacaa 12015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 7565684 - 7565620
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtaca 140  Q
    |||||||||| ||| | |||||||| ||||||||| |||| | |||||||||||||||||| ||||    
T  7565684 ttgacaaagatagatatcattttgagttattaatagagtcgg-gaccaatttgagaatttgataca 7565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 39840903 - 39840996
Alignment:
Q  78 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    ||||||| || ||| |||||||| |||||||||||| ||  || |||||||||||    |||||||| | ||||||| ||| ||||||||||||    
T  39840903 acaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaagatatagatcaaattggtggtttactcaa 39840996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 43031396 - 43031464
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaag 143  Q
    ||||||||||||  || |||||| | ||||||||| | ||||| |||||||| |||||||| |||||||    
T  43031396 ttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatttaagaatttgatacaaag 43031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 26407670 - 26407773
Alignment:
Q  69 aaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 168  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||  ||  || |||||| ||||||    
T  26407670 aaatgattgacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagacagggactaaattgatgatttact 26407769  T
Q  169 caat 172  Q
    ||||    
T  26407770 caat 26407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 36937767 - 36937870
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | || |||||||||||||||||||| | ||||||||| |||||  |||||| |||||||||||||||||||||||  | |||||||||||||    
T  36937767 tgagaaacatttcacaaagacagagaccattttcagttattaatagagtcaaggaccaaattgagaatttggtacaaagacaagaaccaatttgatggtt 36937866  T
Q  165 tact 168  Q
    ||||    
T  36937867 tact 36937870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 29469620 - 29469527
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 157  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| |||||  |||||||||||||||||||||||||| || ||| ||||||    
T  29469620 ctgagaaacatttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaaggcagagaccaattt 29469527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 30786444 - 30786520
Alignment:
Q  93 attttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||| ||||||||| |||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaagacaaagatcaatttgatggtttactc 30786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 36937596 - 36937502
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 171  Q
    |||||||||||| ||||||||  || ||||||||| |||||||||||||||||||||||||||||||||| |  ||  |||||| ||||||||||||    
T  36937596 ttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggactaatttggtggtttactcaa 36937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 26407495 - 26407424
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    ||||||||||||| ||||||||||| ||||||||| |||| || |||||||||| |||||||||||||||||    
T  26407495 ttgacaaagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagaca 26407424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 18143998 - 18144080
Alignment:
Q  90 accattttgaattattaataaagtcagagaccaatttgagaatt---tggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||||| ||||||||| |||||||||||||||| | ||||   ||||| |||||||||||  |||||||||||||||||    
T  18143998 accattttgagttattaatagagtcagagaccaatttaaaaatttggtggtaaaaagacaaagactaatttgatggtttactc 18144080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 29166979 - 29167048
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    |||||||| |||||||||||||||| |||| |||| |||| |  || ||||||| |||||| ||||||||    
T  29166979 ttgacaaaaacagagaccattttgagttatcaatagagtccggtactaatttgaaaatttgttacaaaga 29167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 32013986 - 32014043
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 132  Q
    ||||||||||||| ||| |||||||| ||| |||| ||||| |||| |||||||||||    
T  32013986 ttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgagaat 32014043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 22191527 - 22191623
Alignment:
Q  80 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataatt 176  Q
    ||||||| |||| ||||| || |||||||| |||||| ||| ||||||||| |    ||||||| ||| |||||| ||| |||||||||||| ||||    
T  22191527 aaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaattggtggtttactcaagaatt 22191623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 29166738 - 29166682
Alignment:
Q  113 tcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||| |||||| || |||||| | |||||||||| ||| ||||||||||||||||||    
T  29166738 tcagggaccaaattaagaattcgatacaaagacagagaccaatttgatggtttactc 29166682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 22843846 - 22843767
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 144  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | | || |||||| |||| |||||||||||||||    
T  22843846 tgagaaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 17990837 - 17990743
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||| ||| |||||||||||| ||||||||| |||||| |||||| ||||||||||| ||| ||||||| || ||||||| ||||||||||    
T  17990837 ttgacaaaaacaaagaccattttgagttattaatagagtcagggaccaaattgagaatttgatacgaagacaatgaccaatttggtggtttactc 17990743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 8999818 - 8999898
Alignment:
Q  89 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||||||||| ||||||  ||||| ||||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  8999818 gaccattttgaatcattaatggagtcacagaccaaattgagaatttgatacaaagacaataatcaatttgatggtttactc 8999898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 36151006 - 36151100
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||||||||||||||||||||| ||||| ||| ||| ||  |||||||||||||||||||||||| |||| || |||| || || |||||||    
T  36151006 ttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttgagaatttggtacaaatacaaggaccaatatggtgatttactc 36151100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 13932834 - 13932927
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtc-agagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 168  Q
    ||||||||||||  ||||||||||| ||||||||| |||| ||| | |||||||||||||| ||||||| | |  || |||||||||||||||||    
T  13932834 ttgacaaagacattgaccattttgagttattaatagagtcgaga-atcaatttgagaatttagtacaaaaatagggaccaatttgatggtttact 13932927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 11275823 - 11275891
Alignment:
Q  102 tattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    ||||||||||||||||||| |||||||||||    ||||||||||  || |||||| ||||||||||||    
T  11275823 tattaataaagtcagagactaatttgagaatgatttacaaagacatggaacaatttaatggtttactca 11275891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 22843904 - 22843969
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaa 141  Q
    ||||||||||||  ||||||||| | ||||||||| |||| || ||| |||||||||||||||||||    
T  22843904 ttgacaaagacatggaccattttaagttattaatagagtc-gaaaccgatttgagaatttggtacaa 22843969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 8840028 - 8840125
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaat 172  Q
    ||||||||||||| ||| |||||||| |||||||| |||| | ||| ||| |||||||    |||||| |||  || ||| |||||||||||||||||    
T  8840028 ttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgagaatcccttacaaatacagggaccaaattgatggtttactcaat 8840125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 7481196 - 7481291
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||||||||| |||||||||||| | ||||||||| ||||  |||||| |||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  7481196 ttgacaaagatagagaccattttaagttattaatagagtcgaagaccagtttgagaatttgttacaaatacagagaccaatttgatggtttactca 7481291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 27133913 - 27133842
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||| |||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||    
T  27133913 ttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagaca 27133842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 23329390 - 23329296
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||| ||||||||||||| ||  |||||||| ||||||  ||||| ||||||||||| |||||||| ||  | ||||||||||||||||||    
T  23329390 ttgacaaacacagagaccatttcgaggtattaatagagtcaggaaccaaattgagaatttgatacaaagataagaaccaatttgatggtttactc 23329296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 4066976 - 4066923
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttga 128  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  4066976 ttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 38208522 - 38208583
Alignment:
Q  105 taataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 166  Q
    ||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  38208522 taatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttggtggttta 38208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 4067143 - 4067249
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 163  Q
    |||||||| | ||||||||||| | ||||||||||| ||||||||| |||||  ||||||||| | |||||||||||||||    ||||||||||||| |    
T  4067143 ctgagaaacatttgacaaagac-gtgaccattttgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga-ggggatcaatttgatgat 4067240  T
Q  164 ttactcaat 172  Q
    |||||||||    
T  4067241 ttactcaat 4067249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 49784816 - 49784892
Alignment:
Q  93 attttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    ||||||| ||||||||| |||||| ||||||| |||||| ||||||||||||||  || ||||||| ||||||||||    
T  49784816 attttgagttattaatagagtcagggaccaatatgagaacttggtacaaagacatggaccaatttggtggtttactc 49784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 28504782 - 28504683
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    |||||||| |||||||| | |||||| |||||||| ||||| |||| |||||||||||    |||||||||| |||  ||||||||| ||||||||||||    
T  28504782 ttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagacagagacgaatttgatgatttactcaataa 28504683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 33321310 - 33321405
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 170  Q
    |||||||||||   ||| ||||||| ||||||||| ||||||| |||||||| | ||||||||||||| ||| || |||| |||||| ||||||||    
T  33321310 ttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatttaaaaatttggtacaaaaacagaggtcaaattgatgatttactca 33321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 7481128 - 7481031
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaata 173  Q
    ||||||| ||||| ||| ||||| ||||||||||| ||| || |||||| || ||||||||||||||||| |  ||  |||||||||||||||||||||    
T  7481128 ttgacaatgacagtgacgattttaaattattaatagagttag-gaccaaattaagaatttggtacaaagatagtgactaatttgatggtttactcaata 7481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 33321129 - 33321071
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatt 133  Q
    |||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||||    
T  33321129 ttgacaaagacagagatcattttaaattattaatagagtcaatgaccaatttgagaatt 33321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 2464189 - 2464278
Alignment:
Q  80 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 169  Q
    |||||||  ||| ||||||| ||||||||| |||||  ||||||||||||||||||||||||| ||||| |  |||||| || |||||||    
T  2464189 aaagacaatgactattttgagttattaatagagtcatggaccaatttgagaatttggtacaaatacaaaaactaatttggtgatttactc 2464278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 27134116 - 27134190
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggta 138  Q
    |||||||| | ||||||||||||   |||||||||| ||||||||| ||||| |||||||||| | |||||||||    
T  27134116 ctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaatttaaaaatttggta 27134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 38208361 - 38208279
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||| |||||||||| | | |||||||||| |||| |||| ||||||||||||| || | ||||| ||| |||||||    
T  38208361 ctgagaaatatttgacaaagatataaaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaagaca 38208279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 34535586 - 34535659
Alignment:
Q  92 cattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 165  Q
    |||||||| |||||||||||||||| |||||| |||| ||||| ||||||| | |  || ||||||||||||||    
T  34535586 cattttgagttattaataaagtcagggaccaaattgaaaatttagtacaaatagagggaccaatttgatggttt 34535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 46410831 - 46410924
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 168  Q
    |||| |||||||||||| |||||||| ||||| || ||||| |||| || ||||||||    ||||||||||| || ||||||| |||||||||    
T  46410831 ttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaagacaatgaccaatttggtggtttact 46410924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 6219706 - 6219602
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||||  ||||||||||||| ||| | ||| || |||||||||| ||| |||| | ||| |||||    || ||||||||| |||||||||||||||    
T  6219706 tgagaaatttttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgacttataaagacaaaaatcaatttgatggtt 6219607  T
Q  165 tactc 169  Q
    |||||    
T  6219606 tactc 6219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 20993958 - 20993854
Alignment:
Q  65 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 164  Q
    ||||||| | ||||||||||| || || ||||||| ||||||||| | |||  |||||| ||||||||||  || ||| | | |||||||||||||| ||    
T  20993958 tgagaaacatttgacaaagacggaaactattttgagttattaatagaatcatggaccaagttgagaattttatataaaaatagagatcaatttgatgatt 20993859  T
Q  165 tactc 169  Q
    |||||    
T  20993858 tactc 20993854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 49784624 - 49784544
Alignment:
Q  64 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||| | |||||||||||| |  ||||||||| ||||||||| |||||| ||| || |||| ||||| |||||||||||    
T  49784624 ctgagaaacacttgacaaagacata--ccattttgagttattaatagagtcagggactaaattgaaaatttagtacaaagaca 49784544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 15395261 - 15395207
Alignment:
Q  78 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 132  Q
    |||||||||||||| ||||| || |||||||| ||||| |||| |||||||||||    
T  15395261 acaaagacagagactattttaaaatattaatagagtcatagactaatttgagaat 15395207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 70837 - 70937
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 174  Q
    ||||||||||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||  || |||||| ||||||| ||| ||||    
T  70837 ttgacaaagacatggaccattttgagctattaatagagtcagagaccaatttgagaatttagtacaaagacagggaccaattt-atggttttctcgataa 70935  T
Q  175 tt 176  Q
    ||    
T  70936 tt 70937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 70682 - 70614
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaag 143  Q
    |||||||||||||| | |||||| | ||||||||||||| || ||||||||||||||||  ||||||||    
T  70682 ttgacaaagacagaaatcattttaagttattaataaagtgagggaccaatttgagaattgagtacaaag 70614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 122549 - 122620
Alignment:
Q  75 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 146  Q
    |||||||||||| |||| | |||||| |||||||| |||||||||| |||||||||||||  ||||||||||    
T  122549 ttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaatttcttacaaagaca 122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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