View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3138_high_2 (Length: 509)
Name: NF3138_high_2
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Original strand, 55299905 - 55300386
Alignment:
| Q |
21 |
acagacagtagagttgt---ggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55299905 |
acagacagtagagttgtcgtggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagc |
55300004 |
T |
|
| Q |
118 |
ataggaatttcttggaagctccgactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagag |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300005 |
ataggaatttcttggaagctccaactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagag |
55300104 |
T |
|
| Q |
218 |
aatgaaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300105 |
aatgaaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaag |
55300204 |
T |
|
| Q |
318 |
aacagtggtcattggtggttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatgctcacctctcttctgatagtccct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55300205 |
aacagtggtcattggtggttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctctcttctgatagtccct |
55300304 |
T |
|
| Q |
418 |
actacaagggtctcaccgatcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300305 |
actacaagggtcttaccgatcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
55300386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University