View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3138_high_4 (Length: 484)
Name: NF3138_high_4
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 34478554 - 34478090
Alignment:
| Q |
20 |
actgagataggatatttttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatcaaacaaa |
119 |
Q |
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| T |
34478554 |
actgagataggatatttttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatctaacaaa |
34478455 |
T |
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| Q |
120 |
ttgagat-------------atggttcctaaacttacaaggtttattggcgaaactggatattcaaccaatgaaaatatttccagatatatactacaaat |
206 |
Q |
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| T |
34478454 |
ttgagatcccaagagggactatggttcctaaacttacaaggtttattggcgatactggatattcaaccaatgaaaatatttccagatatatactacaaat |
34478355 |
T |
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| Q |
207 |
ttgggagaacttgttcat-----aggattgaaaatagaatgtttacccagttcattgacaaagaatgctttcacttggttttcaatgttaaaactcaatc |
301 |
Q |
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| T |
34478354 |
ttgggagaacttgttcatgatgaaggattgaaaatagaatgtttccccagttcattgacaaagaatgctttcacttggttttcaatgttaaaactcaatc |
34478255 |
T |
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| Q |
302 |
atgtgtataattggaaccgatttgaaatagatttccactgttaattttatcaatgtgacatgagattcaatctcacttannnnnnncaatgtaaagagag |
401 |
Q |
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| T |
34478254 |
atgtgtataattggaaccgatttgaaatagatttccactgttaattttatcaatgtgacatgagattcaatctcacttatttttttcaatgtaaagagag |
34478155 |
T |
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| Q |
402 |
aattcaatggatttgtcgatgattatctttttagatttagataaatgagggtcaagtgtttcaca |
466 |
Q |
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| T |
34478154 |
aattcaatggatttgtcgatgattatctttctagatttagatagatgagggtcaagtgtttcaca |
34478090 |
T |
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