View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3138_high_9 (Length: 250)
Name: NF3138_high_9
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_high_9 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 50650 - 50886
Alignment:
| Q |
14 |
agattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50650 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
50749 |
T |
|
| Q |
114 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
50849 |
T |
|
| Q |
214 |
aattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
50850 |
aattagatagccaaaatggtttcactaaagagatgtc |
50886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 44498918 - 44498682
Alignment:
| Q |
14 |
agattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44498918 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
44498819 |
T |
|
| Q |
114 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44498818 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
44498719 |
T |
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| Q |
214 |
aattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
44498718 |
aattagatagccaaaatggtttcactaaagagatgtc |
44498682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 3381510 - 3381281
Alignment:
| Q |
11 |
cacagattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3381510 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttagttaaagccaatccagcaaaaggtgcaaa |
3381411 |
T |
|
| Q |
111 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3381410 |
tacaaatttgtatctaaaatagttaacccagcccttacatatttcatacaaaatatgacaactccataaatggaaaattttaact----------caaca |
3381321 |
T |
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| Q |
211 |
aacaattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3381320 |
aacaattagatagccaaaatggtttcactaaagacatgtc |
3381281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 7291 - 7065
Alignment:
| Q |
11 |
cacagattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7291 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
7205 |
T |
|
| Q |
111 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7204 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
7105 |
T |
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| Q |
211 |
aacaattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
7104 |
aacaattagatagccaaaatggtttcactaaagagatgtc |
7065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 17204 - 16978
Alignment:
| Q |
11 |
cacagattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17204 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
17118 |
T |
|
| Q |
111 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
17018 |
T |
|
| Q |
211 |
aacaattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
17017 |
aacaattagatagccaaaatggtttcactaaagagatgtc |
16978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 21778 - 22004
Alignment:
| Q |
11 |
cacagattcacatggtttactctaaagtaatatgaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21778 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
21864 |
T |
|
| Q |
111 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21865 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
21964 |
T |
|
| Q |
211 |
aacaattagatagccaaaatggtttcactaaagacatgtc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21965 |
aacaattagatagccaaaatggtttcactaaagagatgtc |
22004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 30111884 - 30112048
Alignment:
| Q |
82 |
attaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaat |
181 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
30111884 |
attaaagccaatccagcaaaagttacaaatacaaatttgtatccaaaatagttaactcagcccttacattattcacacaaaatatgacaaat-cataaat |
30111982 |
T |
|
| Q |
182 |
ggaaaattttaactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagacat |
247 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30111983 |
ggaaaatttcaactacgaaagggtgaacaaaacattagatagccaaaatgatttcactaaagacat |
30112048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 30110718 - 30110775
Alignment:
| Q |
16 |
attcacatggtttactctaaagt-aatatgaaatccaagattcaagcttaaaaacaaa |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
30110718 |
attcacatggtttactctaaagtgaatatcaaatccaagatataagcttaaaaacaaa |
30110775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 9200091 - 9200166
Alignment:
| Q |
52 |
agattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| |||||||| |
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|
| T |
9200091 |
agattcaagcttaaaaacaaaacatacttaactaaagccaatcca-aaaaagttgc-aatacaaatttggatccaaaa |
9200166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 9201854 - 9201928
Alignment:
| Q |
52 |
agattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||| |||||||||||| |||||||| |
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|
| T |
9201854 |
agattcaagcttaaaaacaaaacctacttaactaaagccaatcca--aaaaattgc-aatacaaatttggatccaaaa |
9201928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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