View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3138_low_16 (Length: 213)
Name: NF3138_low_16
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 883254 - 883115
Alignment:
| Q |
55 |
catttacagaacaagggtattgagacttttgagactactaatggcaacatcaaacgagttttcttctatgaccctgatggtaatcaagactaattaatta |
154 |
Q |
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| T |
883254 |
catttacaggacaagggtattgagacttttgagactactaatggcaacatcaaacgagttttcttctatgaccctgatggtaatcaagactaattaatta |
883155 |
T |
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| Q |
155 |
gtaatttttgtactataatttactgaaattatgggatgat |
194 |
Q |
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| T |
883154 |
gtaatttttgtactataatttactgaaattatgggatgat |
883115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 880606 - 880561
Alignment:
| Q |
92 |
ctaatggcaacatcaaacgagttttcttctatgaccctgatggtaa |
137 |
Q |
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| T |
880606 |
ctaatggcaaaatcaaacaagttttcttttttgaccctgatggtaa |
880561 |
T |
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