View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3138_low_3 (Length: 495)
Name: NF3138_low_3
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 163 - 484
Target Start/End: Complemental strand, 43076177 - 43075856
Alignment:
| Q |
163 |
gtgcttcccgtgagtccctttattcttgtgtgtgaatgtgaaaaatattcttgttgggataacataacactcactttccaagctctttacgaaactatat |
262 |
Q |
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| T |
43076177 |
gtgcttcccgtgagtccctttattcttgtgtgtgaatgtgaaaagtattcttgttgggataacataacactcactttccaagctctttacgaaactatat |
43076078 |
T |
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| Q |
263 |
ttcaccttaaaatttacgtagatctcaccactttataaattgttacgtatactagtgatatctacaaaattacaactggtgagaaaaatgacgttgaaaa |
362 |
Q |
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| T |
43076077 |
ttcacagtaaaatttacgtagatctcaccactttataaattgttgtgtatactagtgatatctacaaaattacaaatagtgagaaaaatgacgttgaaaa |
43075978 |
T |
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| Q |
363 |
gatattgttaggatgaatcttgttagcaatgtttagtatgcattattatgcgaagtgctaacttttctggagctgcatgctaatagttggatacttgtat |
462 |
Q |
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| T |
43075977 |
gatattgttaggatgaatcttgttagcaatgtttagtatgcattattatgcgaagtgctaacttttcgggagctgcatgctaatagttggatacttgtat |
43075878 |
T |
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| Q |
463 |
atataattaagttgttgttgtt |
484 |
Q |
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| T |
43075877 |
atataattaagttgttgttgtt |
43075856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 43076323 - 43076266
Alignment:
| Q |
17 |
agaaattaagagagatgaacaatctaaattctaaaccacaggcacgggacatgttgca |
74 |
Q |
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| T |
43076323 |
agaaattaagagagatgaacaatctaaattctaaaccacaggcacaggacatgttgca |
43076266 |
T |
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