View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3138_low_5 (Length: 439)
Name: NF3138_low_5
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Original strand, 25062260 - 25062678
Alignment:
| Q |
15 |
atcattcacgaataagagaccaaataatgcccgcaatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttccc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25062260 |
atcattcacgaataagagaccaaataatgcccgcaatatatcaaggccagtctacatcttcagggaaaggcacgttggagtaattaacagttgtcttccc |
25062359 |
T |
|
| Q |
115 |
atcaagagaaactatatcataaggtgaatcttctccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25062360 |
atcaagagaaactatatcataaggtgaatcttctccaaattcagttggcattagcttccaatatagacttggttcccactctgcttctttgattacattc |
25062459 |
T |
|
| Q |
215 |
aatatttcctttgttactgtttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggagaaacaaatt |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25062460 |
aatatttcctttgttactatttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggataaacaaatt |
25062559 |
T |
|
| Q |
315 |
tgaaacattatagtttaggtgcaaataaatgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25062560 |
tgaaacattatagtttaggtgcaaataaatgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaat |
25062659 |
T |
|
| Q |
415 |
gacctttatgttcatctca |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
25062660 |
gacctttatgttcatctca |
25062678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 48 - 433
Target Start/End: Original strand, 25070999 - 25071381
Alignment:
| Q |
48 |
caatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggtgaatcttc |
147 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
25070999 |
caatatatcaaggccaatctacatcttcagggaaaggcacattggagaaattaa---ttgtcttcccatcaagagtaaccatatcataaggtgaatcttc |
25071095 |
T |
|
| Q |
148 |
tccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctca |
247 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
25071096 |
tccaaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctca |
25071195 |
T |
|
| Q |
248 |
tttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggagaaacaaatttgaaacattatagtttaggtgcaaataaatgag |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||| |||||| | ||||| | |
|
|
| T |
25071196 |
tttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagttttggtgcatacaaatgcg |
25071295 |
T |
|
| Q |
348 |
accatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
433 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||| || ||||||||| |
|
|
| T |
25071296 |
accatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctca |
25071381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 49 - 433
Target Start/End: Original strand, 25083904 - 25084287
Alignment:
| Q |
49 |
aatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggtgaatcttct |
148 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||||||||| |||| |||||| | || ||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25083904 |
aatatatcaaggccactctacaccatcaggaaaaggcacatcggagaaattaatatttatcttcccatcaagagaaaccatatcataaggagaatcttct |
25084003 |
T |
|
| Q |
149 |
ccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctcat |
248 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||| || ||||||||| |||||||||||| | |
|
|
| T |
25084004 |
ccaaattcagctggcattaacttccaatatagacttggtttccactctgcttcttcgatgacattcaatatctcttttgttactatttcactccccttgt |
25084103 |
T |
|
| Q |
249 |
ttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggagaaacaaatttgaaacattatagtttaggtgcaaataaatgaga |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||| ||| ||| ||||||||| | |||||||| |
|
|
| T |
25084104 |
ttgatagatgaactccatcactaagaaataatcaaatcccctaattaaattattgataaacaaatttgaaatattttag-ttaggtgcatacaaatgaga |
25084202 |
T |
|
| Q |
349 |
ccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
433 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
25084203 |
tcgtacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatctca |
25084287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 50 - 337
Target Start/End: Original strand, 25089683 - 25089973
Alignment:
| Q |
50 |
atatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggtgaatcttctc |
149 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25089683 |
atatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttcccgtcaagagaaaccatatcataaggtgtatcttctc |
25089782 |
T |
|
| Q |
150 |
caaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctcatt |
249 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||| || || ||||||||||| |||||||||||| |||||||||||||| | |
|
|
| T |
25089783 |
caaattcagctggcattaacttacaatatagacttggttcccactctgctttctttatgacattcaatatctcctttgttactatttcactcccctcagt |
25089882 |
T |
|
| Q |
250 |
tgatagatgaactccatcactaagaaataatcaaaccacctaattaa---attacggagaaacaaatttgaaacattatagtttaggtgca |
337 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||| || ||| |||| || |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
25089883 |
tgataaatgtactccatcactaagaaataatcaaaccaccaaactaaattattattgataaacaaatttaaaacattttagattaggtgca |
25089973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 429
Target Start/End: Original strand, 25058166 - 25058464
Alignment:
| Q |
137 |
ggtgaatcttctccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgttt |
236 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| || || | ||||||||||| || ||| |
|
|
| T |
25058166 |
ggtgaatcttctccaaattcaactggcattgtcttccaatatagatttggttcccactctgcttctttgataaccttaattatttcctttgacaccattt |
25058265 |
T |
|
| Q |
237 |
cactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggagaaacaaatttgaaaca---tta-tagtttag |
332 |
Q |
| |
|
||||||||||| || | ||||| ||||||||||| |||||| |||| || |||||||||| | || | ||||||||| | | ||| || | ||| |
|
|
| T |
25058266 |
cactcccctcagcagagaaatgaattccatcactaaaaaataaccaaatcatctaattaaatcattgaaatgcaaatttgatatatatttattaatatag |
25058365 |
T |
|
| Q |
333 |
gtgc--aaataaatgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcat |
429 |
Q |
| |
|
| | | ||| |||||| || ||||||||||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||| |||| |||||||| |
|
|
| T |
25058366 |
ggacatacatatatgagagcacacttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcat |
25058464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 25090491 - 25090579
Alignment:
| Q |
345 |
gagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
433 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25090491 |
gagatcatacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatctca |
25090579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 25094670 - 25094759
Alignment:
| Q |
343 |
atgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctc |
432 |
Q |
| |
|
|||||| || |||||| |||| ||||||| || ||| | ||| ||||| || ||||||||||||| ||||||| |||| || |||||||| |
|
|
| T |
25094670 |
atgagagcaaacttacgtgaagcaaacatttcgccagttatcccttttttggattgcagaccacagatcaatggccttgatattcatctc |
25094759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University