View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3138_low_8 (Length: 255)
Name: NF3138_low_8
Description: NF3138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3138_low_8 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 51080 - 51314
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
51080 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagactctttaacacttcttcgccccctaattgggttgaat |
51179 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
51180 |
acatttttttccatctctttagcttt-aaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
51278 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
51279 |
ggcataaaagaaagcaataattttctattacaaata |
51314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6871 - 6639
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6871 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaat |
6775 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
6774 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
6675 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6674 |
ggcataaaagaaagcaataattttctattacaaata |
6639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 16784 - 16552
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16784 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaat |
16688 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
16687 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
16588 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16587 |
ggcataaaagaaagcaataattttctattacaaata |
16552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 22198 - 22430
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22198 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaat |
22294 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
22295 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
22394 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22395 |
ggcataaaagaaagcaataattttctattacaaata |
22430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15709027 - 15708795
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15709027 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctaattgggttgaat |
15708931 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
15708930 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
15708831 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15708830 |
ggcataaaagaaagcaataattttctattacaaata |
15708795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26795767 - 26796005
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
26795767 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttggaccctttaacacttcttcttcccctaattgtgttgaat |
26795866 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatctttt-atgagttt----ccttttggtcgtagggtggttttatactatatcctctgtgt |
193 |
Q |
| |
|
||| | |||||||| ||||||||||| |||||||||||||||||| || ||||| ||||||||| |||| ||||| ||||||||| |||| ||| |
|
|
| T |
26795867 |
gcatct-tttccatccctttagctttttaactaaagatcatctttttattagtttacaaccttttggttgtagagtggtaccatactatatactctatgt |
26795965 |
T |
|
| Q |
194 |
gatgggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795966 |
gatgggcataaaagaaagcaataattttctattacaaata |
26796005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3381090 - 3380859
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
3381090 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagtccctttaacacttct----cccctaattgggttgaat |
3380995 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcatc-ttttatgagtttccttttggtcgtagggtggttttatactatatcctctgtgtgatg |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3380994 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtattatactatatcctctatgtgatg |
3380895 |
T |
|
| Q |
198 |
ggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380894 |
ggcataaaagaaagcaataattttctattacaaata |
3380859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 44498488 - 44498317
Alignment:
| Q |
1 |
cttctgcaccttgagtatgcacaatccttctttgcttggttccca--gtcttgacattttagaccctttaacacttcttctccccctaattgggttgaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
44498488 |
cttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct---ccccctagttgggttgaat |
44498392 |
T |
|
| Q |
99 |
acatttctttccatctctttagcttttaaactaaagatcat-cttttatgagtttccttttggtcgtagggtggt |
172 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44498391 |
acatttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggt |
44498317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 44498186 - 44498127
Alignment:
| Q |
174 |
ttatactatatcctctgtgtgatgggcataaaagaaagcaataattttctattacaaata |
233 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498186 |
ttatactatatcctctatgtgatgggcataaaagaaagcaataattttctattacaaata |
44498127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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