View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3139_high_4 (Length: 241)

Name: NF3139_high_4
Description: NF3139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3139_high_4
NF3139_high_4
[»] chr8 (3 HSPs)
chr8 (1-226)||(26291479-26291704)
chr8 (1-226)||(26304736-26304961)
chr8 (1-226)||(26338091-26338316)
[»] scaffold0438 (1 HSPs)
scaffold0438 (1-226)||(5860-6085)
[»] chr3 (13 HSPs)
chr3 (1-222)||(8032634-8032855)
chr3 (5-220)||(1304022-1304231)
chr3 (109-222)||(481607-481720)
chr3 (112-222)||(5360365-5360479)
chr3 (116-222)||(476681-476787)
chr3 (6-63)||(476586-476643)
chr3 (128-220)||(24104352-24104444)
chr3 (5-199)||(1186795-1186983)
chr3 (5-199)||(1204859-1205047)
chr3 (6-67)||(481519-481580)
chr3 (99-220)||(1187188-1187309)
chr3 (5-55)||(5360524-5360574)
chr3 (110-197)||(777571-777655)
[»] chr4 (1 HSPs)
chr4 (106-222)||(52187457-52187570)
[»] chr2 (7 HSPs)
chr2 (106-218)||(38989743-38989852)
chr2 (6-55)||(43867038-43867087)
chr2 (6-55)||(43874722-43874771)
chr2 (109-222)||(43863414-43863524)
chr2 (109-222)||(43866889-43866999)
chr2 (6-55)||(43863563-43863612)
chr2 (109-222)||(43874573-43874683)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26291479 - 26291704
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26291479 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26291578  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26291579 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26291678  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26291679 ctctctcttctatcaaacatgtgaat 26291704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26304736 - 26304961
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26304736 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26304835  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26304836 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26304935  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26304936 ctctctcttctatcaaacatgtgaat 26304961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26338091 - 26338316
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26338091 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26338190  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26338191 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26338290  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26338291 ctctctcttctatcaaacatgtgaat 26338316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5860 - 6085
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5860 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 5959  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5960 ttcgaaatctattttggaatcgagttatatgctccaacacttcattcctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 6059  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  6060 ctctctcttctatcaaacatgtgaat 6085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8032855 - 8032634
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  8032855 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtataatttcttgtctggttgtaatcctagaactgccgat 8032756  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  ||| |||||||||||||| ||||||| ||||||||||||||    
T  8032755 ttcgaaatctattttggaatcaagttatatgctccaacacttcatacatttgatttttacggaggtcattatattccgaaactttttgggagcaagaccg 8032656  T
Q  201 ctctctcttctatcaaacatgt 222  Q
     |||||||||||||||||||||    
T  8032655 ttctctcttctatcaaacatgt 8032634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 1304231 - 1304022
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1304231 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1304138  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctct 204  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||| |||    
T  1304137 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagaccgttct 1304038  T
Q  205 ctcttctatcaaacat 220  Q
    ||||||||||||||||    
T  1304037 ctcttctatcaaacat 1304022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 481607 - 481720
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||| ||||| |||||||||||||||||  ||||||||||| ||| ||   ||||||| |||||||||||||||  ||||||||||| || |||||||    
T  481607 ctatttcggaattgagttatatgctccaactgttcatacctttaattatagttgtggtcaatatattccaaaacttgttgggagcaagagcgttctctct 481706  T
Q  209 tctatcaaacatgt 222  Q
    ||||||||||||||    
T  481707 tctatcaaacatgt 481720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 5360479 - 5360365
Alignment:
Q  112 ttttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtc----attatat-tccaaaactttctgggagcaagaccgctctct 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||    || |||| ||||||||||| |||||||||||||| ||||     
T  5360479 ttttggaatcgagttatatgctccaacaattcatacctttgattttgctggtgatcaataataatatatccaaaactttttgggagcaagaccgttctc- 5360381  T
Q  207 cttctatcaaacatgt 222  Q
    ||||||||||||||||    
T  5360380 cttctatcaaacatgt 5360365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 476681 - 476787
Alignment:
Q  116 ggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctcttctatca 215  Q
    |||||||||||||||||||||||  | ||||| ||||| | ||  |||||| | |||||||||||||||| |||||||||||  | | ||||||||||||    
T  476681 ggaatcgagttatatgctccaactgtccatacttttgaatatagtggtggtgaatatattccaaaactttttgggagcaagagtgttatctcttctatca 476780  T
Q  216 aacatgt 222  Q
    |||||||    
T  476781 aacatgt 476787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 476586 - 476643
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgta 63  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  476586 atgcacaaaaccttcgcatttcaagtaccaagcttctcaatttaactatatgtatgta 476643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 24104444 - 24104352
Alignment:
Q  128 tatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctcttctatcaaacat 220  Q
    |||||||||||||||||| || ||| ||| |||||| || ||||||||||||||| || ||| ||||||||   |||||||||||||||||||    
T  24104444 tatgctccaacacttcattcccttgttttgaccggtcgtgattatattccaaaacattttggaagcaagactcttctctcttctatcaaacat 24104352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 1186795 - 1186983
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1186795 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1186888  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagacc 199  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||    
T  1186889 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagacc 1186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 1204859 - 1205047
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1204859 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1204952  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagacc 199  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||    
T  1204953 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagacc 1205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 481519 - 481580
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgat 67  Q
    |||||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| ||||||||    
T  481519 atgcacgaaacctttgcatttcaagtaccaagcttctcagtttaactatatgtatgtatgat 481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 1187188 - 1187309
Alignment:
Q  99 atttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagac 198  Q
    ||||| ||||| |||| |||||| | || | |||||||||| ||||| |||||| |||| |  ||| | |||||||||||||||| | ||||||||| ||    
T  1187188 atttcaaaatcgatttcggaatccacttgtgtgctccaacaattcattcctttgttttttctagtgctaattatattccaaaactctttgggagcaacac 1187287  T
Q  199 cgctctctcttctatcaaacat 220  Q
    | || ||||| |||||||||||    
T  1187288 cactttctctactatcaaacat 1187309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 5360574 - 5360524
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    ||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||    
T  5360574 aatgcacaaaaccatcgtatttcaagtaccaagcctgttaatttaactata 5360524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 777655 - 777571
Alignment:
Q  110 tattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaaga 197  Q
    ||||||| | ||||| |||||||||||   ||||||||||||  |||||| |||   | ||||||||||||||||| |||||||||||    
T  777655 tattttgaactcgagctatatgctccatgtcttcataccttttcttttacgggt---ctttatattccaaaactttttgggagcaaga 777571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 52187457 - 52187570
Alignment:
Q  106 aatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctc 205  Q
    ||||||||||||||| ||| ||||||||||||  ||||||||||||| ||||||    ||||  |||| ||||||||||| |||||||||||  | ||||    
T  52187457 aatctattttggaattgagctatatgctccaagtcttcatacctttgcttttac---gggtcgctatactccaaaactttttgggagcaagagtgttctc 52187553  T
Q  206 tcttctatcaaacatgt 222  Q
    |||||||||||||||||    
T  52187554 tcttctatcaaacatgt 52187570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 38989743 - 38989852
Alignment:
Q  106 aatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctc 205  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||||| ||||||    ||||  |||| ||||||||||| ||| |||||||  | ||||    
T  38989743 aatctattttggaatcgagctatatgctccaagtcttcataactttgcttttac---gggtcgctatactccaaaactttttggcagcaagagtgttctc 38989839  T
Q  206 tcttctatcaaac 218  Q
    ||||| |||||||    
T  38989840 tcttccatcaaac 38989852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43867087 - 43867038
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43867087 atgcacaaaacctttgcatatcaagtaccaagcttgtcaatttaactata 43867038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43874771 - 43874722
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43874771 atgcacaaaacctttgcatatcaagtaccaagcttgtcaatttaactata 43874722  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43863524 - 43863414
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| ||||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||  | |||||||    
T  43863524 ctattttggactcgagctatatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatgttctctct 43863428  T
Q  209 tctatcaaacatgt 222  Q
    ||||| ||||||||    
T  43863427 tctataaaacatgt 43863414  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43866999 - 43866889
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| | ||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||  | |||||||    
T  43866999 ctattttggactcgagctgtatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatgttctctct 43866903  T
Q  209 tctatcaaacatgt 222  Q
    ||||||||||||||    
T  43866902 tctatcaaacatgt 43866889  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43863612 - 43863563
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| ||||| |||||||||||||||||||    
T  43863612 atgcacaaaacctttgcatatcaagtaccaggcttgtcaatttaactata 43863563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43874683 - 43874573
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| ||||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||    |||||||    
T  43874683 ctattttggactcgagctatatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatcttctctct 43874587  T
Q  209 tctatcaaacatgt 222  Q
    ||||| ||||||||    
T  43874586 tctataaaacatgt 43874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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