View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3139_low_1 (Length: 937)
Name: NF3139_low_1
Description: NF3139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3139_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 262 - 647
Target Start/End: Complemental strand, 1590652 - 1590267
Alignment:
| Q |
262 |
agagaaaatgctgttgtggtgggatataatt--gatggtaatttcttaaattaggaaccgatcaagtgatatcgatgttagaaactaaattgatagtgta |
359 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1590652 |
agagaaaatgctgttttggtgggatataattttgatggtaatttcttaaattaggaaccga---agtgttatcgatgttagaaactaaattgatactgta |
1590556 |
T |
|
| Q |
360 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590555 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
1590456 |
T |
|
| Q |
460 |
aaaaagtttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctcccccc |
559 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1590455 |
aaaaagtctgggatattttatctgaagttgcaaagtcgcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctccgccc |
1590356 |
T |
|
| Q |
560 |
tcacattttcctcaaaaacaataacaattaggctaatataaata-tggttgaatgacataaacttagacaacaaatggtacaatgacat |
647 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590355 |
tcacattttcctcataaacaataacaattaggctaatataaatattagatgaatgacataaacttagacaacaaatggtacaatgacat |
1590267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 467 - 605
Target Start/End: Original strand, 1588989 - 1589129
Alignment:
| Q |
467 |
ttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcct-cccccctcacat |
565 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1588989 |
ttggaatagtttatctgaagttgcaaagtcccaaaactgtgtcttctttgaaacatgtcttcattgtttctcaccctctattctcctccccccctcacat |
1589088 |
T |
|
| Q |
566 |
tttcctcaaaaacaataacaattaggct-aatataaatatg |
605 |
Q |
| |
|
||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
1589089 |
ttttctcacaaacattaacaattaggctaaatataaatatg |
1589129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 1588841 - 1588959
Alignment:
| Q |
143 |
ttaactttaattttttgctatcttttattaatgtcgtctcgtctgtgacgatatcatttaaggattggctctc--aacattcacagtggctgcctaggag |
240 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
1588841 |
ttaactttaattttttgctat-ttttattaatgtcgtttcgtcagtgacgatatcatttaaggattggttctcaaaacattcgcagtggctgccgaggag |
1588939 |
T |
|
| Q |
241 |
tattggcctttgccaacctt |
260 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
1588940 |
ttttagcctttgccaacctt |
1588959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 1588389 - 1588468
Alignment:
| Q |
66 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactgtta |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1588389 |
aaattgcttgaagataagctttaattgctttatggggtctgaattctactgcttatgatgattttgattttcaactgtta |
1588468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 628 - 921
Target Start/End: Complemental strand, 19267820 - 19267523
Alignment:
| Q |
628 |
aacaaatggtacaatgacatggttgattttttggggggtaggttcaggaatagattctgttgatggaacaacagaagaagatggtgaatttaaagcatta |
727 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
19267820 |
aacaaatggatcaatgacatggttgattttttaaggg-taggttcaggaatagattctgttgatggaacaacagaagaagatggtgaatttaaaaca-tc |
19267723 |
T |
|
| Q |
728 |
actatcatcaaaataaaacaagagaaagaggacttgctgaaaagcatgcgtcttttgg--atatgggatcaatatcttatggatcttcttcttcatttgg |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19267722 |
actatcatcaaaataaaacaagagaaagaggacttgctgaaaagcatgtgtcttttggatatatgggatcaatatcttatggatcttcttcttca-ttgg |
19267624 |
T |
|
| Q |
826 |
agcaagttgcaccggtgta------aagtgcttcttttctcgtctttctttcatagatattcactggtccaggaggatgatgaagtttatgtgtgttaat |
919 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19267623 |
agcaagttgcaccggtgtaattaataagtgcttc-tttctcgtctttctttcagagatattcgctggtccaggaggatgatgaagtttatgtgtgttaat |
19267525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 19268252 - 19268071
Alignment:
| Q |
66 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgctta----tgatgattttgatgttcaactgttaactttaattttttgct |
161 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
19268252 |
aaattgcttgaaaataagctttgattgctttatagggtttgaattctactgcttaattatgatggttttgatgttcaactgttaactttaattttgtgct |
19268153 |
T |
|
| Q |
162 |
atcttttattaatgtcgtctcgtctgtgac--gatatcatttaaggattggctctc--aacattcacagtggctgcctagga |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
19268152 |
atcttttattaatgtcgtctcgtctgtgacgagatatcatttaaggattggttctcaaaacatttgcagtggctgcctagga |
19268071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 8152870 - 8152933
Alignment:
| Q |
79 |
ataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactg |
142 |
Q |
| |
|
||||||||| ||| |||||||| | || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8152870 |
ataagctttgattactttatggaggtttaattatactgcttatgatgattttgatgttcaactg |
8152933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University