View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3139_low_2 (Length: 340)
Name: NF3139_low_2
Description: NF3139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3139_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 6094660 - 6094337
Alignment:
| Q |
18 |
aaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc------------------tttc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6094660 |
aaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatcaggtactagcatacctcttttc |
6094561 |
T |
|
| Q |
100 |
gtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctcatgcacaaaattg |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094560 |
gtagttttttagtaatgttggatttcaaaacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctcatgcacaaaattg |
6094461 |
T |
|
| Q |
199 |
tccattttagttttcctataaaaatgaatcaagtagagggaaattcatattatataacttaatttaaaaatcaagtctaaacaaaagcattgaatttgga |
298 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094460 |
tccattttggttttcctataaagatgaatcaagtagagggaaattcatattagataacttaatttaaaaatcaagtctaaacaaaagcattgaatttgga |
6094361 |
T |
|
| Q |
299 |
atgtgacacatagagtgaaggcca |
322 |
Q |
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|||||||||||||||||||||||| |
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| T |
6094360 |
atgtgacacatagagtgaaggcca |
6094337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 44188511 - 44188176
Alignment:
| Q |
6 |
aatcaaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc---------- |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| | |||||| ||||||||||| ||||| |
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| T |
44188511 |
aatcaaaggagcaaatccaagcaaaattgttgaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaa |
44188412 |
T |
|
| Q |
96 |
--------tttcgtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctca |
186 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44188411 |
atacctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctca |
44188312 |
T |
|
| Q |
187 |
tgcacaaaattgtccattttagttttcctataaaaatgaatcaagtagagggaaattcatattatataacttaatttaaaaatcaagtctaaacaaaagc |
286 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
44188311 |
tgcacaaaattgtccattttggttttcctataaaaatgaatcaattagagggaaattcaaattagataacttaatttaaaaatcaagtctaaacaaaagc |
44188212 |
T |
|
| Q |
287 |
attgaatttggaatgtgacacatagagtgaaggcca |
322 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
44188211 |
attgaatttcgaatgtgacacatagagtgaaggcca |
44188176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 32727638 - 32727303
Alignment:
| Q |
6 |
aatcaaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc---------- |
95 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||| | |||||| ||||||||||| ||||| |
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| T |
32727638 |
aatcaaaggagcaaatccaagcaaaattgtttaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaa |
32727539 |
T |
|
| Q |
96 |
--------tttcgtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctca |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727538 |
atacctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctca |
32727439 |
T |
|
| Q |
187 |
tgcacaaaattgtccattttagttttcctataaaaatgaatcaagtagagggaaattcatattatataacttaatttaaaaatcaagtctaaacaaaagc |
286 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
32727438 |
tgcacaaaattgtccattttggttttcctataaaaatgaatcaattagagggaaattcaaattagataacttaatttaaaaatcaagtctaaacaaaagc |
32727339 |
T |
|
| Q |
287 |
attgaatttggaatgtgacacatagagtgaaggcca |
322 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
32727338 |
attgaatttcgaatgtgacacatagagtgaaggcca |
32727303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 43095571 - 43095660
Alignment:
| Q |
6 |
aatcaaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc |
95 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43095571 |
aatcaaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatc |
43095660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 43095684 - 43095724
Alignment:
| Q |
101 |
tagttttttagtaatgttggatttcaatacaaatgagaaaa |
141 |
Q |
| |
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|||| ||||||||||| || ||||||||||||||||||||| |
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| T |
43095684 |
tagtattttagtaatgctgaatttcaatacaaatgagaaaa |
43095724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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