View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3139_low_3 (Length: 326)
Name: NF3139_low_3
Description: NF3139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3139_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 7973694 - 7973974
Alignment:
| Q |
29 |
aaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttc |
128 |
Q |
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| T |
7973694 |
aaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttc |
7973793 |
T |
|
| Q |
129 |
tctctcttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcgga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
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| T |
7973794 |
tctctcttcccatgcctaccatcgccgccgtcaccggtcacgcatccgccgcaggttacatcctcgcattatctcacgactacgtgttaatgcgatccga |
7973893 |
T |
|
| Q |
229 |
tcgtggatttctctacatgagtgagcttgacatcgatcatgtgattccggcgtggtttattgcgattgttgatgcgaaggt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973894 |
tcgtggatttctctacatgagtgagcttgacatcgatcatgtgattccggcgtggtttattgcgattgttgatgcgaaggt |
7973974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 7967196 - 7966966
Alignment:
| Q |
28 |
caaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaactt |
127 |
Q |
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| T |
7967196 |
caaattcttctccaacggctatgacatcgattgggcacaatctaacaaatctcgcttcatcctcatcgatgattcactccgttctgtcctttccgaactc |
7967097 |
T |
|
| Q |
128 |
ctctctcttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcgg |
227 |
Q |
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| T |
7967096 |
atttctctccctatgcctaccattgccgttgtcaccggtcacgcctccaccgccggttacatcttcgcactttctcacgactactttttaatgagctccg |
7966997 |
T |
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| Q |
228 |
atcgtggatttctctacatgagtgagcttga |
258 |
Q |
| |
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||| || ||||||||||| || |||||||| |
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| T |
7966996 |
atcatgaatttctctacaagaacgagcttga |
7966966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 27962920 - 27962868
Alignment:
| Q |
158 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
210 |
Q |
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||||||||| | || || |||| |||||||||||||| ||||||||||||||| |
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| T |
27962920 |
gtcaccggtaacgcctcagccgtaggttacatcctcgaattatctcacgacta |
27962868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 270
Target Start/End: Complemental strand, 55819654 - 55819429
Alignment:
| Q |
45 |
gttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcc |
144 |
Q |
| |
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|||| |||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| |||||| || |
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| T |
55819654 |
gttatgacatcgactgggcacaaaacaacaactctcgcatgatcctcatcgacgatctcctctgtttcatcgtctccgaaattctctctcctcccatacc |
55819555 |
T |
|
| Q |
145 |
taccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctac |
244 |
Q |
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|||||||||| |||||||||| | || || || | |||||||||||||| ||||||||| ||||| || ||| |||||| |||||| ||||||||||| |
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| T |
55819554 |
aaccatcgccgtcgtcaccggtaacgcctcagcagtaggttacatcctcggattatctcatgactacgtgttatagcgatcagatcgtagatttctctac |
55819455 |
T |
|
| Q |
245 |
atgagtgagcttgacatcgatcatgt |
270 |
Q |
| |
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||||| || ||||||| ||||||||| |
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| T |
55819454 |
atgagcgaacttgacagcgatcatgt |
55819429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 1068726 - 1068946
Alignment:
| Q |
50 |
gacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcctacca |
149 |
Q |
| |
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|||||||| |||||| || ||||||| || ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
1068726 |
gacatcgattgggcataaaacaacaactctcgcatgatcctcatcgacgatctcctccgttccatcgtctccaaacttctctctcttcccatgccaacca |
1068825 |
T |
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| Q |
150 |
tcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctacatgag |
249 |
Q |
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||| | |||||||||| | || || || |||||||||||||| ||||||||||||||| | ||| |||||| ||||||||||||||| ||||||| |
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| T |
1068826 |
tcgttgtcgtcaccggtaacgcctcatccttaggttacatcctcggattatctcacgactacatgttatagcgatcagatcgtggatttctcaacatgag |
1068925 |
T |
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| Q |
250 |
tgagcttgacatcgatcatgt |
270 |
Q |
| |
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|| ||||||| ||||||||| |
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| T |
1068926 |
cgaacttgacagcgatcatgt |
1068946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 14838770 - 14838822
Alignment:
| Q |
158 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
210 |
Q |
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||||||||| | || || |||| |||||||||||||| ||||||||||||||| |
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| T |
14838770 |
gtcaccggtaacgcctcagccgtaggttacatcctcggattatctcacgacta |
14838822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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