View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3139_low_4 (Length: 241)

Name: NF3139_low_4
Description: NF3139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3139_low_4
NF3139_low_4
[»] chr8 (3 HSPs)
chr8 (1-226)||(26291479-26291704)
chr8 (1-226)||(26304736-26304961)
chr8 (1-226)||(26338091-26338316)
[»] scaffold0438 (1 HSPs)
scaffold0438 (1-226)||(5860-6085)
[»] chr3 (13 HSPs)
chr3 (1-222)||(8032634-8032855)
chr3 (5-220)||(1304022-1304231)
chr3 (109-222)||(481607-481720)
chr3 (112-222)||(5360365-5360479)
chr3 (116-222)||(476681-476787)
chr3 (6-63)||(476586-476643)
chr3 (128-220)||(24104352-24104444)
chr3 (5-199)||(1186795-1186983)
chr3 (5-199)||(1204859-1205047)
chr3 (6-67)||(481519-481580)
chr3 (99-220)||(1187188-1187309)
chr3 (5-55)||(5360524-5360574)
chr3 (110-197)||(777571-777655)
[»] chr4 (1 HSPs)
chr4 (106-222)||(52187457-52187570)
[»] chr2 (7 HSPs)
chr2 (106-218)||(38989743-38989852)
chr2 (6-55)||(43867038-43867087)
chr2 (6-55)||(43874722-43874771)
chr2 (109-222)||(43863414-43863524)
chr2 (109-222)||(43866889-43866999)
chr2 (6-55)||(43863563-43863612)
chr2 (109-222)||(43874573-43874683)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26291479 - 26291704
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26291479 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26291578  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26291579 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26291678  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26291679 ctctctcttctatcaaacatgtgaat 26291704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26304736 - 26304961
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26304736 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26304835  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26304836 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26304935  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26304936 ctctctcttctatcaaacatgtgaat 26304961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26338091 - 26338316
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26338091 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 26338190  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26338191 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 26338290  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  26338291 ctctctcttctatcaaacatgtgaat 26338316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5860 - 6085
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5860 tgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgat 5959  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5960 ttcgaaatctattttggaatcgagttatatgctccaacacttcattcctttgattttaccggtggtcattatattccaaaactttttgggagcaagaccg 6059  T
Q  201 ctctctcttctatcaaacatgtgaat 226  Q
    ||||||||||||||||||||||||||    
T  6060 ctctctcttctatcaaacatgtgaat 6085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8032855 - 8032634
Alignment:
Q  1 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  8032855 tgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtataatttcttgtctggttgtaatcctagaactgccgat 8032756  T
Q  101 ttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  ||| |||||||||||||| ||||||| ||||||||||||||    
T  8032755 ttcgaaatctattttggaatcaagttatatgctccaacacttcatacatttgatttttacggaggtcattatattccgaaactttttgggagcaagaccg 8032656  T
Q  201 ctctctcttctatcaaacatgt 222  Q
     |||||||||||||||||||||    
T  8032655 ttctctcttctatcaaacatgt 8032634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 1304231 - 1304022
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1304231 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1304138  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctct 204  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||| |||    
T  1304137 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagaccgttct 1304038  T
Q  205 ctcttctatcaaacat 220  Q
    ||||||||||||||||    
T  1304037 ctcttctatcaaacat 1304022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 481607 - 481720
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||| ||||| |||||||||||||||||  ||||||||||| ||| ||   ||||||| |||||||||||||||  ||||||||||| || |||||||    
T  481607 ctatttcggaattgagttatatgctccaactgttcatacctttaattatagttgtggtcaatatattccaaaacttgttgggagcaagagcgttctctct 481706  T
Q  209 tctatcaaacatgt 222  Q
    ||||||||||||||    
T  481707 tctatcaaacatgt 481720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 5360479 - 5360365
Alignment:
Q  112 ttttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtc----attatat-tccaaaactttctgggagcaagaccgctctct 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||    || |||| ||||||||||| |||||||||||||| ||||     
T  5360479 ttttggaatcgagttatatgctccaacaattcatacctttgattttgctggtgatcaataataatatatccaaaactttttgggagcaagaccgttctc- 5360381  T
Q  207 cttctatcaaacatgt 222  Q
    ||||||||||||||||    
T  5360380 cttctatcaaacatgt 5360365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 476681 - 476787
Alignment:
Q  116 ggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctcttctatca 215  Q
    |||||||||||||||||||||||  | ||||| ||||| | ||  |||||| | |||||||||||||||| |||||||||||  | | ||||||||||||    
T  476681 ggaatcgagttatatgctccaactgtccatacttttgaatatagtggtggtgaatatattccaaaactttttgggagcaagagtgttatctcttctatca 476780  T
Q  216 aacatgt 222  Q
    |||||||    
T  476781 aacatgt 476787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 476586 - 476643
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgta 63  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  476586 atgcacaaaaccttcgcatttcaagtaccaagcttctcaatttaactatatgtatgta 476643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 24104444 - 24104352
Alignment:
Q  128 tatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctcttctatcaaacat 220  Q
    |||||||||||||||||| || ||| ||| |||||| || ||||||||||||||| || ||| ||||||||   |||||||||||||||||||    
T  24104444 tatgctccaacacttcattcccttgttttgaccggtcgtgattatattccaaaacattttggaagcaagactcttctctcttctatcaaacat 24104352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 1186795 - 1186983
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1186795 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1186888  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagacc 199  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||    
T  1186889 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagacc 1186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 1204859 - 1205047
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcg 104  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| || |||||| || ||  |||     | |||    ||| |  ||||||     
T  1204859 aatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttgctattcta----ccatcaccaaaccg--gatttca 1204952  T
Q  105 aaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagacc 199  Q
    |||||| ||| ||| | |||||||||||||||||||||||| |||||| ||| |  |||| | |||||||||||||| ||  |||||||||||||    
T  1204953 aaatctttttcggactagagttatatgctccaacacttcattcctttgttttcaatggtgctgattatattccaaaatttgttgggagcaagacc 1205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 481519 - 481580
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactatatgtgtgtatgat 67  Q
    |||||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| ||||||||    
T  481519 atgcacgaaacctttgcatttcaagtaccaagcttctcagtttaactatatgtatgtatgat 481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 1187188 - 1187309
Alignment:
Q  99 atttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagac 198  Q
    ||||| ||||| |||| |||||| | || | |||||||||| ||||| |||||| |||| |  ||| | |||||||||||||||| | ||||||||| ||    
T  1187188 atttcaaaatcgatttcggaatccacttgtgtgctccaacaattcattcctttgttttttctagtgctaattatattccaaaactctttgggagcaacac 1187287  T
Q  199 cgctctctcttctatcaaacat 220  Q
    | || ||||| |||||||||||    
T  1187288 cactttctctactatcaaacat 1187309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 5360574 - 5360524
Alignment:
Q  5 aatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    ||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||    
T  5360574 aatgcacaaaaccatcgtatttcaagtaccaagcctgttaatttaactata 5360524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 777655 - 777571
Alignment:
Q  110 tattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaaga 197  Q
    ||||||| | ||||| |||||||||||   ||||||||||||  |||||| |||   | ||||||||||||||||| |||||||||||    
T  777655 tattttgaactcgagctatatgctccatgtcttcataccttttcttttacgggt---ctttatattccaaaactttttgggagcaaga 777571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 52187457 - 52187570
Alignment:
Q  106 aatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctc 205  Q
    ||||||||||||||| ||| ||||||||||||  ||||||||||||| ||||||    ||||  |||| ||||||||||| |||||||||||  | ||||    
T  52187457 aatctattttggaattgagctatatgctccaagtcttcatacctttgcttttac---gggtcgctatactccaaaactttttgggagcaagagtgttctc 52187553  T
Q  206 tcttctatcaaacatgt 222  Q
    |||||||||||||||||    
T  52187554 tcttctatcaaacatgt 52187570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 38989743 - 38989852
Alignment:
Q  106 aatctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctc 205  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||||| ||||||    ||||  |||| ||||||||||| ||| |||||||  | ||||    
T  38989743 aatctattttggaatcgagctatatgctccaagtcttcataactttgcttttac---gggtcgctatactccaaaactttttggcagcaagagtgttctc 38989839  T
Q  206 tcttctatcaaac 218  Q
    ||||| |||||||    
T  38989840 tcttccatcaaac 38989852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43867087 - 43867038
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43867087 atgcacaaaacctttgcatatcaagtaccaagcttgtcaatttaactata 43867038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43874771 - 43874722
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  43874771 atgcacaaaacctttgcatatcaagtaccaagcttgtcaatttaactata 43874722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43863524 - 43863414
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| ||||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||  | |||||||    
T  43863524 ctattttggactcgagctatatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatgttctctct 43863428  T
Q  209 tctatcaaacatgt 222  Q
    ||||| ||||||||    
T  43863427 tctataaaacatgt 43863414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43866999 - 43866889
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| | ||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||  | |||||||    
T  43866999 ctattttggactcgagctgtatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatgttctctct 43866903  T
Q  209 tctatcaaacatgt 222  Q
    ||||||||||||||    
T  43866902 tctatcaaacatgt 43866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43863612 - 43863563
Alignment:
Q  6 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 55  Q
    |||||||||||||| |||| |||| ||||| |||||||||||||||||||    
T  43863612 atgcacaaaacctttgcatatcaagtaccaggcttgtcaatttaactata 43863563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43874683 - 43874573
Alignment:
Q  109 ctattttggaatcgagttatatgctccaacacttcatacctttgattttaccggtggtcattatattccaaaactttctgggagcaagaccgctctctct 208  Q
    |||||||||| ||||| ||||||||||||  ||||| ||||||| |||| |   ||||| ||||| ||||||||||| ||  |||||||    |||||||    
T  43874683 ctattttggactcgagctatatgctccaagtcttcaaacctttgctttttc---tggtccttatactccaaaactttttgcaagcaagaatcttctctct 43874587  T
Q  209 tctatcaaacatgt 222  Q
    ||||| ||||||||    
T  43874586 tctataaaacatgt 43874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University