View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_high_15 (Length: 462)
Name: NF3140_high_15
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 2 - 456
Target Start/End: Original strand, 18685443 - 18685897
Alignment:
| Q |
2 |
ttttcatgtttgtggtttcattttggtcactgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacggtcatgttct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18685443 |
ttttcatgtttgtggtttcattttggtcactgcagctaaggacattaaagggcggacacagagcaagagtgggctcattggcttggaacggtcatgttct |
18685542 |
T |
|
| Q |
102 |
cacaacaggaggtatggatggtaagattgtaaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacatgaggtttgcggg |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18685543 |
cacaacagggggtatggatggtaagattgtaaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacgtgaggtttgcggg |
18685642 |
T |
|
| Q |
202 |
ctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcacctaccc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18685643 |
ctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcacctaccc |
18685742 |
T |
|
| Q |
302 |
gttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtggaagcggaggtga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18685743 |
gttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtggaggcggaggtga |
18685842 |
T |
|
| Q |
402 |
ttgttgcgtaaagctatggaacacgggcatgggtgaacgtgtgaattctgatgat |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
18685843 |
ttgttgcgtaaagctatggaacacgggcatgggtgaacgcatgaattctgttgat |
18685897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 43526999 - 43526588
Alignment:
| Q |
14 |
tggtttcattttggtcactgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacggtcatgttctcacaacaggagg |
113 |
Q |
| |
|
|||||| |||||||| |||| |||||||| || ||||||| |||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
43526999 |
tggttttattttggtgactgaagctaagggcaatgaagggtggacacagagcaagagtgggttcattggcttggaacaaccatattctgacaacaggagg |
43526900 |
T |
|
| Q |
114 |
tatggatggtaagattgtaaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacatgaggtttgcgggctcaaatggtca |
213 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| ||| | | ||||||| ||||||| || |||||||| |||||||| |||||| |
|
|
| T |
43526899 |
aatggatggtaaagttgtaaacaatgatgttagagtgagatctcacatcgttgaaacatacatgggacacaaccaggaggtttgtgggctcaagtggtca |
43526800 |
T |
|
| Q |
214 |
ctcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcacctacccgttggctttata |
313 |
Q |
| |
|
| | ||| ||||| |||||||||| || ||||||||||| |||||||||||||||| || | ||||||||||||||||||||||| |||||| | | |
|
|
| T |
43526799 |
ccctcaggacaacaattggcaagtggtggaaacgataatgttgttcacatatgggatagatccgtggtttcttcaaattcacctacccgatggcttcaca |
43526700 |
T |
|
| Q |
314 |
ggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtggaagcggaggtgattgttgcgtaaa |
413 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| |||| | || |
|
|
| T |
43526699 |
ggtttgaggaacacatagctgctgtgaaggcactggcttggtgtccctttcagggtaatctactggcttctggtggaggtggaggtgatcattgcattaa |
43526600 |
T |
|
| Q |
414 |
gctatggaacac |
425 |
Q |
| |
|
||| |||||||| |
|
|
| T |
43526599 |
gctgtggaacac |
43526588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 58 - 425
Target Start/End: Complemental strand, 13119494 - 13119127
Alignment:
| Q |
58 |
cacagagcaagagtgggatcattggcttggaacggtcatgttctcacaacaggaggtatggatggtaagattgtaaacaatgatgttagattgagatctc |
157 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||| |||| |||| ||||| ||||| ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
13119494 |
cacagagcaagagtaggttcactggcatggaacaatcatattctaacaactggaggaatggatggtaagattgttaataatgatgttagagtgagatctc |
13119395 |
T |
|
| Q |
158 |
agatcatcaacacatacaggggacaccgacatgaggtttgcgggctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgt |
257 |
Q |
| |
|
| || | | | | ||||| ||| | ||||||||| |||||||||||||||| | ||||| ||| |||| ||||| || | |||| ||| || |
|
|
| T |
13119394 |
acattgttgaaagtttcagggcacataaaggtgaggtttgtgggctcaaatggtcaccctcaggaaagcaattggcgagtggtggaagcgattctgttgt |
13119295 |
T |
|
| Q |
258 |
tcacatatgggatatgtctgctgtttcttcaaattcacctacccgttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgt |
357 |
Q |
| |
|
|||||||||||||| || | ||||| || ||||||| |||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13119294 |
tcacatatgggatagttcagtggtttcgtcgaattcacgtaccggttggcttcacaggtttaatgaacacaaagctgctgtgaaggcactggcttggtgt |
13119195 |
T |
|
| Q |
358 |
ccttttcagggtaatctattggcttctggtggaagcggaggtgattgttgcgtaaagctatggaacac |
425 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||||||||| ||||| | ||||| |||||||| |
|
|
| T |
13119194 |
ccttttcaggctaatctattggcttctggtggaggtggaggtgatcgttgcattaagctgtggaacac |
13119127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 390
Target Start/End: Original strand, 16694424 - 16694783
Alignment:
| Q |
31 |
ctgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacggtcatgttctcacaacaggaggtatggatggtaagattg |
130 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||||| |||||| | || ||||||||||||||||| ||| ||||||||||| ||||||||||| || | |
|
|
| T |
16694424 |
ctgcaggtaagaacattgaggggtggacacagagaaagagtcagtgcactggcttggaacggtcatactctgacaacaggaggaatggatggtaaaatag |
16694523 |
T |
|
| Q |
131 |
taaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacat-gaggtttgcgggctcaaatggtcactcgatggaaaacaac |
229 |
Q |
| |
|
|||||||||| |||||| |||||| || ||| | | || || ||||||| || | | |||||| |||||||||||||||| | |||| ||||| |
|
|
| T |
16694524 |
taaacaatgacgttagagcgagatcacacatcgttgaaaccctcaagggacac-gatagaggggtttgtgggctcaaatggtcaccctctggacaacaat |
16694622 |
T |
|
| Q |
230 |
tggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcacctacccgttggctttataggtttgatgaacacaa |
329 |
Q |
| |
|
|||||||||| || || ||| |||| | ||| |||||||||| ||| | | |||||||||||||||||||||||||||| | ||||| || |||||| | |
|
|
| T |
16694623 |
tggcaagtggtggaaatgatgatgttgctcagatatgggataggtcagtggcttcttcaaattcacctacccgttggcttcacaggttcgaggaacacga |
16694722 |
T |
|
| Q |
330 |
agctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtgga |
390 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16694723 |
atctgctgtgaaggcactggcttggtgtcctttccagggtaatctattggcttctggtgga |
16694783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 390
Target Start/End: Original strand, 17668660 - 17669019
Alignment:
| Q |
31 |
ctgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacggtcatgttctcacaacaggaggtatggatggtaagattg |
130 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||||| |||||| | || ||||||||||||||||| ||| ||||||||||| ||||||||||| || | |
|
|
| T |
17668660 |
ctgcaggtaagaacattgaggggtggacacagagaaagagtcagtgcactggcttggaacggtcatactctgacaacaggaggaatggatggtaaaatag |
17668759 |
T |
|
| Q |
131 |
taaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacat-gaggtttgcgggctcaaatggtcactcgatggaaaacaac |
229 |
Q |
| |
|
|||||||||| |||||| |||||| || ||| | | || || ||||||| || | | |||||| |||||||||||||||| | |||| ||||| |
|
|
| T |
17668760 |
taaacaatgacgttagagcgagatcacacatcgttgaaaccctcaagggacac-gatagaggggtttgtgggctcaaatggtcaccctctggacaacaat |
17668858 |
T |
|
| Q |
230 |
tggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcacctacccgttggctttataggtttgatgaacacaa |
329 |
Q |
| |
|
|||||||||| || || ||| |||| | ||| |||||||||| ||| | | |||||||||||||||||||||||||||| | ||||| || |||||| | |
|
|
| T |
17668859 |
tggcaagtggtggaaatgatgatgttgctcagatatgggataggtcagtggcttcttcaaattcacctacccgttggcttcacaggttcgaggaacacga |
17668958 |
T |
|
| Q |
330 |
agctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtgga |
390 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17668959 |
atctgctgtgaaggcactggcttggtgtcctttccagggtaatctattggcttctggtgga |
17669019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 19026242 - 19025861
Alignment:
| Q |
12 |
tgtggtttcattttggtcactgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacg---gtcatgttctcacaaca |
108 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| ||| | ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
19026242 |
tgtgatttcattttggtatctgcagctaaccacattaaagagtggacacagagccggagtgagttcactggcttggaacaacagtcatattctcacaaca |
19026143 |
T |
|
| Q |
109 |
ggaggtatggatggtaagattgtaaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacatgaggtttgcgggctcaaat |
208 |
Q |
| |
|
||||| ||| | ||||| || ||||| ||||| |||||| |||||||||| |||||| | |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
19026142 |
ggaggaatgaacggtaaaatagtaaataatgacgttagagtgagatctca---catcaattcgtacaggggacacactgatgaggtttgcggcctcaagt |
19026046 |
T |
|
| Q |
209 |
ggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcac---ctacccgttg |
305 |
Q |
| |
|
|||| || ||||||||| || |||| ||||| || | |||||||| |||||||||||||||| |||||| |||||||||| ||||| |||||||||| |
|
|
| T |
19026045 |
ggtcgcttgatggaaaaaaattggcgagtggtggaagtgataatgttgttcacatatgggataggtctgcggtttcttcaagttcacggactacccgttg |
19025946 |
T |
|
| Q |
306 |
gctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtgga |
390 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||||| ||||| ||||| |||||||| |||||| || || | || |||||||||||| |
|
|
| T |
19025945 |
gcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagcttctggtgga |
19025861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 20728394 - 20728775
Alignment:
| Q |
12 |
tgtggtttcattttggtcactgcagctaaggacattgaagggcggacacagagcaagagtgggatcattggcttggaacg---gtcatgttctcacaaca |
108 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| ||| | ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
20728394 |
tgtgatttcattttggtatctgcagctaaccacattaaagagtggacacagagccggagtgagttcactggcttggaacaacagtcatattctcacaaca |
20728493 |
T |
|
| Q |
109 |
ggaggtatggatggtaagattgtaaacaatgatgttagattgagatctcagatcatcaacacatacaggggacaccgacatgaggtttgcgggctcaaat |
208 |
Q |
| |
|
||||| ||| | ||||| || ||||| ||||| |||||| |||||||||| |||||| | |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
20728494 |
ggaggaatgaacggtaaaatagtaaataatgacgttagagtgagatctca---catcaattcgtacaggggacacactgatgaggtttgcggcctcaagt |
20728590 |
T |
|
| Q |
209 |
ggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcac---ctacccgttg |
305 |
Q |
| |
|
|||| || ||||||||| || |||| ||||| || | |||||||| |||||||||||||||| |||||| |||||||||| ||||| |||||||||| |
|
|
| T |
20728591 |
ggtcgcttgatggaaaaaaattggcgagtggtggaagtgataatgttgttcacatatgggataggtctgcggtttcttcaagttcacggactacccgttg |
20728690 |
T |
|
| Q |
306 |
gctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtgga |
390 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||||| ||||| ||||| |||||||| |||||| || || | || |||||||||||| |
|
|
| T |
20728691 |
gcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagcttctggtgga |
20728775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 388
Target Start/End: Original strand, 43218243 - 43218438
Alignment:
| Q |
196 |
tgcgggctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattca- |
294 |
Q |
| |
|
||||||||||| ||||| |||||||| || || |||| |||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
43218243 |
tgcgggctcaagtggtctctcgatggccaataattggctagtgggggaggcgataatgtcgttcatatatgggataggtctgctgcttcttcaaattcac |
43218342 |
T |
|
| Q |
295 |
--cctacccgttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtg |
388 |
Q |
| |
|
|| || ||||||||| | | |||||| ||||||| |||| |||| ||||| ||||||||||||| |||||| ||||| |||| ||||| |||| |
|
|
| T |
43218343 |
ggcccacacgttggcttcacaagtttgaggaacacacagctcctgtcaaggcgttggcttggtgtccgtttcagtgtaatttattagcttcaggtg |
43218438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 196 - 390
Target Start/End: Complemental strand, 43170091 - 43169895
Alignment:
| Q |
196 |
tgcgggctcaaatggtcactcgatggaaaacaactggcaagtgggggtaacgataatgtcgttcacatatgggatatgtctgctgtttcttcaaattcac |
295 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||| |||||||| ||||||| |||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
43170091 |
tgcgggctcaagtggtctctcgatggccaacaattggctagtgggggaggcgataatatcgt-cacatatgggataggtctgctgcttcttcaaattcac |
43169993 |
T |
|
| Q |
296 |
---ctacccgttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtgga |
390 |
Q |
| |
|
| || ||||||||| | | |||||| ||||||| |||| || | |||||| ||||||||||||| |||||| ||||| |||| ||||| |||||| |
|
|
| T |
43169992 |
ggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttcaggtgga |
43169895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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