View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_18 (Length: 433)
Name: NF3140_high_18
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 64 - 433
Target Start/End: Original strand, 47125653 - 47126020
Alignment:
| Q |
64 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
163 |
Q |
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| T |
47125653 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
47125752 |
T |
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| Q |
164 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaagtaatgtaactattattcgaatatatatataacttgagtgtaac |
263 |
Q |
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| T |
47125753 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaaataatgtaactattattggtatatatatat--cttgagtgtaac |
47125850 |
T |
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| Q |
264 |
tcaagttctgaatctgatttccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgacctt |
363 |
Q |
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| T |
47125851 |
tcaagttctgaatctgatttccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgacctt |
47125950 |
T |
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| Q |
364 |
ttatcaccttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttc |
433 |
Q |
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| T |
47125951 |
ttatcatcttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttc |
47126020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 47124581 - 47124619
Alignment:
| Q |
36 |
tgaaaagagtcctttaccatgataagggcgtgtaacaag |
74 |
Q |
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| T |
47124581 |
tgaaaagagtcctttaccatgataagggtgtgtaacaag |
47124619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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