View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_20 (Length: 404)
Name: NF3140_high_20
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 27980050 - 27980287
Alignment:
| Q |
38 |
ttattttaaatcgattannnnnnncatccaaaccgcataactaacacccacattttctatctaattcttttttaaaaataataaatttgcagttagagaa |
137 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27980050 |
ttattttaaatcgattatttttttcatcataaccgcataacgaacacccacattttctatctaattcttttttaaaaataataaatttgcagttagagaa |
27980149 |
T |
|
| Q |
138 |
aattgt--gagataagttgaattgtttggaaatagtaaaaagttggagttagcaatagtaagagttgattaaatgcaatg---cagttattattagttaa |
232 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
27980150 |
aattgtgagagataagttgaattgtttggaaatagtaaaaagttggagttagcaatagtaagagttgattaaatgcaatgcaacacttattattagttaa |
27980249 |
T |
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| Q |
233 |
agttgtcgtttcattactctaaaatgaaaaaagaattg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27980250 |
agttgtcgtttcattactctaaaatgaaaaaagaattg |
27980287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 28066580 - 28066817
Alignment:
| Q |
38 |
ttattttaaatcgattannnnnnncatccaaaccgcataactaacacccacattttctatctaattcttttttaaaaataataaatttgcagttagagaa |
137 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28066580 |
ttattttaaatcgattatttttttcatcataaccgcataacgaacacccacattttctatctaattcttttttaaaaataataaatttgcagttagagaa |
28066679 |
T |
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| Q |
138 |
aattgt--gagataagttgaattgtttggaaatagtaaaaagttggagttagcaatagtaagagttgattaaatgcaatg---cagttattattagttaa |
232 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
28066680 |
aattgtgagagataagttgaattgtttggaaatagtaaaaagttggagttagcaatagtaagagttgattaaatgcaatgcaacacttattattagttaa |
28066779 |
T |
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| Q |
233 |
agttgtcgtttcattactctaaaatgaaaaaagaattg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28066780 |
agttgtcgtttcattactctaaaatgaaaaaagaattg |
28066817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 27980995 - 27981068
Alignment:
| Q |
262 |
aaagaattgtcgttttgtgcattgatacttaacacgatacatacgctgaagacgcggtgagtggcgccatattacaa |
338 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
27980995 |
aaagaattgtcgttttgtgcattgatacttaacac-atac--acgctgaagacgcggtgagtggcgccatattacaa |
27981068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 28067525 - 28067598
Alignment:
| Q |
262 |
aaagaattgtcgttttgtgcattgatacttaacacgatacatacgctgaagacgcggtgagtggcgccatattacaa |
338 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
28067525 |
aaagaattgtcgttttgtgcattgatacttaacac-atac--acgctgaagacgcggtgagtggcgccatattacaa |
28067598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 26421295 - 26421255
Alignment:
| Q |
304 |
acgctgaagacgcggtgagtg--gcgccatattacaatgcc |
342 |
Q |
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| T |
26421295 |
acgctgaagacgcggtgagtggcgcgccatattacaatgcc |
26421255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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