View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_high_24 (Length: 382)

Name: NF3140_high_24
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_high_24
NF3140_high_24
[»] chr6 (1 HSPs)
chr6 (19-370)||(17362932-17363283)
[»] chr3 (3 HSPs)
chr3 (125-181)||(43939257-43939312)
chr3 (123-176)||(44657692-44657743)
chr3 (123-176)||(45526168-45526219)
[»] chr1 (1 HSPs)
chr1 (113-187)||(42862675-42862749)
[»] chr2 (1 HSPs)
chr2 (113-187)||(14185954-14186028)
[»] chr7 (1 HSPs)
chr7 (104-179)||(5355510-5355584)
[»] chr5 (1 HSPs)
chr5 (133-190)||(17865104-17865161)
[»] chr4 (2 HSPs)
chr4 (123-176)||(49250856-49250907)
chr4 (118-163)||(34638269-34638314)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 17363283 - 17362932
Alignment:
Q  19 ggttgaggcgaattaacccatgttgaaccttctccgagaatccatagatctttcattacctgaatcagagacccatcacctatactctcattgttttgat 118  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17363283 ggttgaggcgaatgaacccatgctgaaccttctccaagaatccatagatctttcattacctgaatcagagacccatcacctatactctcaatgttttgat 17363184  T
Q  119 ggaattttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaaactgacaaaattgtgaaagttatcgcaacaatttttaagtga 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  17363183 ggaattttgtcaatttgaatttaaacattaatttctcgaataagctaacattatgtaaactgacaaaattgtgaaagttattgcaacaatttttaagtaa 17363084  T
Q  219 aatcttgttatgcagaaagttgttccaacttataaaaaacatattttcacacatggacatggtgatgtcagcatcagtggcggtcgcaccgccactggcg 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17363083 aatcttgttatccagaaagttgttccaacttataaaaaacatattttcacacatggacatggtggtgtcaggatcagtggcggtcgcaccgccactggcg 17362984  T
Q  319 gtggtgcaatcttaacattcatttatcattgttgtaattctgcaatgttgtc 370  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  17362983 gtggtgcaatcttaacattcatttatcattgttgtaattatgtaatgttgtc 17362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 43939257 - 43939312
Alignment:
Q  125 ttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaaactga 181  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  43939257 ttgtcaatttgaatttgaacattaatttctggaataagctaaca-tatgtaaactga 43939312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 44657692 - 44657743
Alignment:
Q  123 ttttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaa 176  Q
    |||||||||||||||||  ||||||||||||| ||||||| |||||||| ||||    
T  44657692 ttttgtcaatttgaatt--aacattaatttcttgaataaggtaacattacgtaa 44657743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 45526168 - 45526219
Alignment:
Q  123 ttttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaa 176  Q
    |||||||||||||||||  ||||||||||||| ||||||| |||||||| ||||    
T  45526168 ttttgtcaatttgaatt--aacattaatttcttgaataagataacattacgtaa 45526219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 42862675 - 42862749
Alignment:
Q  113 tttgatggaattttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaaactgacaaaat 187  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||  |||||| |||||||| |||||    
T  42862675 tttgctggaattttgtcaatttaaatttgaacattaatttcttgaataagctttcattatataaactgataaaat 42862749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 14186028 - 14185954
Alignment:
Q  113 tttgatggaattttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaaactgacaaaat 187  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||| ||  |||||| |||||||| |||||    
T  14186028 tttgctggaattttgtcaatttaaatttgaacattaatttcttgaataacctttcattatataaactgataaaat 14185954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 5355510 - 5355584
Alignment:
Q  104 tctcattgttttgatggaattttgtcaatttgaatttaaacattaatttctggaataagct-aacattatgtaaact 179  Q
    ||||| || |||| ||||||||||||||||||||||  ||||||||||||| ||||||| | |||||||||||||||    
T  5355510 tctcactgatttgctggaattttgtcaatttgaatt--aacattaatttcttgaataagataaacattatgtaaact 5355584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 17865161 - 17865104
Alignment:
Q  133 ttgaatttaaacattaatttctggaataagctaacattatgtaaactgacaaaattgt 190  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||||  ||||||||    
T  17865161 ttgaatttaaactttaatttctggaataaactaacatcatgtaaactggtaaaattgt 17865104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 49250856 - 49250907
Alignment:
Q  123 ttttgtcaatttgaatttaaacattaatttctggaataagctaacattatgtaa 176  Q
    |||||||||||||||||  ||||||||||||| ||||||| |||||||| ||||    
T  49250856 ttttgtcaatttgaatt--aacattaatttcttgaataaggtaacattacgtaa 49250907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 34638269 - 34638314
Alignment:
Q  118 tggaattttgtcaatttgaatttaaacattaatttctggaataagc 163  Q
    |||||||||||||| || ||||| ||||||||||| ||||||||||    
T  34638269 tggaattttgtcaagtttaatttgaacattaatttttggaataagc 34638314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University