View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_29 (Length: 351)
Name: NF3140_high_29
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 54293851 - 54294174
Alignment:
| Q |
1 |
gatttaagcgaaaaacagtttgaattctatagtaactgcagagaatctaaacacacatttcaaatctaacaacttataccttaagcatattaaaactgaa |
100 |
Q |
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| T |
54293851 |
gatttaagtgaaaaacagtttgaattctatagtaactgcagagaatctaaacacacatttcaaatctaacaacttataccttaagcatattaaaactgaa |
54293950 |
T |
|
| Q |
101 |
aattaaatcaaagatcagaacatattgctcctatgaatcagaatctagtcaaactaaagggcaatctttgatcccaattcatcactcaaactatcctctc |
200 |
Q |
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| T |
54293951 |
aattaaatcaaagatcagaacatattgctcctatgaatcagaatctagtcaaactaaagggaaatctttgatcccaattcatcactcaaactatcctctc |
54294050 |
T |
|
| Q |
201 |
aatgaacaagattgtgtcattccttccagttcatcaatcaaaagtcaaaactatcctctcaatgtataaaaccagtcgttctcaaaacctaaaccatgtt |
300 |
Q |
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| T |
54294051 |
aatgaacaagattgtgtcattccttccagttcatcaatcaaaagtcaaaactatcctctcaatgtataaaaccagtcgttctcaaaacctaaaccatgtt |
54294150 |
T |
|
| Q |
301 |
taaggcataatataatttgggaat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
54294151 |
taaggcataatataatttgggaat |
54294174 |
T |
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