View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_high_32 (Length: 345)
Name: NF3140_high_32
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 33203330 - 33203664
Alignment:
| Q |
1 |
ccaataataactcagaaatttaccctaacccttctcaagatcaatttgatcaaactcaagacttcacttctctgtcagatatttactctaataaccaaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203330 |
ccaataatacctcagaaatttaccctaacccttctcaagatcaatttgatcaaactcaagacttcacttctctgtcagatatttactctaataaccaaaa |
33203429 |
T |
|
| Q |
101 |
cctggcttataattaccctaacacaaacactaatctggatcatttagttaatgatttcaataataaccaaccaaacaacaacaccaatagcaactgggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203430 |
cctggcttataattaccctaacacaaacactaatctggatcatttagttaatgatttcaataataaccaaccaaacaacaacaccaatagcaactgggat |
33203529 |
T |
|
| Q |
201 |
ttcattgaagagcttattcgtgccgctgattgtttcgataacaatcatcttcaactagctcaagcaatattagagcggctgaatcaacggctacgatctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203530 |
ttcattgaagagcttattcgtgccgctgattgtttcgataacaatcatcttcaactagctcaagcaatattagagcggctgaatcaacggctacgatctc |
33203629 |
T |
|
| Q |
301 |
caaccggtaaaccgttacaccgtgccgcgtttcat |
335 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33203630 |
caaccggtaaaccattacaccgtgccgcgtttcat |
33203664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University