View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_33 (Length: 344)
Name: NF3140_high_33
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 42095301 - 42095147
Alignment:
| Q |
184 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
283 |
Q |
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| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
42095202 |
T |
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| Q |
284 |
actcataatctcaagttcgactaatgttgtttcaattttactattttcttctcac |
338 |
Q |
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| T |
42095201 |
actcataatctcaagttcgactaatgttgtttcaattttactatttccttctcac |
42095147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 42095464 - 42095341
Alignment:
| Q |
21 |
gttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttctaggaagtgnnnnnnnngcaact |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
42095464 |
gttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttcttggaagtgttttttttgcaact |
42095365 |
T |
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| Q |
121 |
gtaaccatgtcgtgcaagatcata |
144 |
Q |
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|||||| ||||||||||||||||| |
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| T |
42095364 |
gtaaccgtgtcgtgcaagatcata |
42095341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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