View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_34 (Length: 321)
Name: NF3140_high_34
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 5038237 - 5038533
Alignment:
| Q |
6 |
agcagcacagaaaccagaaagtatgaggagataaaattcaatccagaccctatcaaaccaaggataaggcctatctcgaagcacttttaaaatctaaaaa |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5038237 |
agcaccacaaaaaccagaaagtatgaggagataaaagtcaattcaaaccctatcaaaccaaggataaggcctatctcgaagcacttttaaaatgtaaaaa |
5038336 |
T |
|
| Q |
106 |
agacccataagatatctttaaaaaccatttttaagaggaggatttaattctattcaattcacgaattgttcaacacatagaatcttgtcgtcatagaaga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
5038337 |
agacccataagatatctttaaaaaccatttttaagaggaggatttaattctattc-----acgaattgttcaacacttagaatcttgtcgtcatagaaga |
5038431 |
T |
|
| Q |
206 |
catcatcatttccaaaagacatgaaaacttaacatagatggaacaaaattcaatggaatggacaattgccaccataaccacgaaaacactttatacctta |
305 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038432 |
catcatcatttccaaaagacatgaaaacttaatatagatggaacaaaattcaatggaatggacaattgccaccataaccacgaaaacactttatacctta |
5038531 |
T |
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