View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_high_4 (Length: 686)
Name: NF3140_high_4
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 131 - 668
Target Start/End: Complemental strand, 32230940 - 32230407
Alignment:
| Q |
131 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtattttctcaatgtttgttacttttagaaaatcaaaagtaagacataagtataaag |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32230940 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtatattctcaatgtttgttacttttagaaaatcaaaagtaagacacaagtataaag |
32230841 |
T |
|
| Q |
231 |
acaaataaacatatgcggtatcacattccacgtatgtattttgatgttccactaacacaaactcaaggttatattttgattgatggaatgaagtagaata |
330 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32230840 |
ataaataaacatatgcggtatcacattccaagtatgtattttaatgttccaataacacaaactcaaggttatattttgattgatggaatgaagtagaata |
32230741 |
T |
|
| Q |
331 |
agatagtgttatattgttttaatagtctttaaaagagtggaatagaaaggaattcaatggcatccattcaatcacatttattcacattttgcatcccctt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32230740 |
agatagtgttatattgttttaatagtctttaaaagagtgaaatagaaaggaattcgatggcatccattcaatcacatttattcacattttgcatcccctt |
32230641 |
T |
|
| Q |
431 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32230640 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
32230541 |
T |
|
| Q |
531 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32230540 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
32230441 |
T |
|
| Q |
631 |
acaaaacgtacatatataacatgcagagataaataaac |
668 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32230440 |
acaaa----acatatataacatgcagagataaataaac |
32230407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 32231101 - 32230981
Alignment:
| Q |
5 |
ggtagattattctcaacaaattgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
104 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32231101 |
ggtatattattctcaacaaactgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
32231002 |
T |
|
| Q |
105 |
gatcatactttctataatatg |
125 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32231001 |
gatcatactttctataatatg |
32230981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University