View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_high_41 (Length: 294)

Name: NF3140_high_41
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_high_41
NF3140_high_41
[»] chr6 (4 HSPs)
chr6 (212-294)||(20599421-20599503)
chr6 (212-294)||(6922663-6922745)
chr6 (216-293)||(12606651-12606728)
chr6 (214-251)||(21023758-21023795)
[»] chr4 (11 HSPs)
chr4 (212-293)||(35130641-35130722)
chr4 (209-294)||(49479450-49479535)
chr4 (214-294)||(31351702-31351782)
chr4 (214-294)||(40981815-40981895)
chr4 (212-294)||(13538284-13538366)
chr4 (215-294)||(55967780-55967859)
chr4 (212-294)||(35010412-35010494)
chr4 (216-274)||(42657503-42657561)
chr4 (212-294)||(50264019-50264100)
chr4 (237-294)||(10601888-10601945)
chr4 (212-241)||(45872386-45872415)
[»] chr7 (9 HSPs)
chr7 (215-283)||(40097948-40098015)
chr7 (212-294)||(9667260-9667342)
chr7 (211-274)||(45664673-45664736)
chr7 (216-294)||(36877001-36877079)
chr7 (213-274)||(19554704-19554765)
chr7 (212-283)||(32958486-32958557)
chr7 (225-294)||(13054605-13054674)
chr7 (212-241)||(45967443-45967472)
chr7 (215-251)||(44165959-44165995)
[»] chr3 (9 HSPs)
chr3 (212-294)||(3313490-3313572)
chr3 (213-255)||(7950929-7950971)
chr3 (214-251)||(51816021-51816058)
chr3 (214-290)||(32594563-32594639)
chr3 (216-246)||(51829633-51829663)
chr3 (216-294)||(54240605-54240683)
chr3 (207-244)||(21177113-21177150)
chr3 (217-289)||(33439978-33440050)
chr3 (214-294)||(55009521-55009601)
[»] chr1 (2 HSPs)
chr1 (212-294)||(7550009-7550091)
chr1 (214-278)||(44729823-44729887)
[»] chr5 (2 HSPs)
chr5 (214-294)||(36730211-36730290)
chr5 (215-274)||(43406053-43406112)
[»] chr2 (3 HSPs)
chr2 (214-294)||(31068922-31069002)
chr2 (215-283)||(34028097-34028165)
chr2 (212-244)||(9199009-9199041)
[»] chr8 (4 HSPs)
chr8 (212-294)||(28300084-28300166)
chr8 (212-291)||(12959704-12959783)
chr8 (212-245)||(9209641-9209674)
chr8 (212-244)||(31441264-31441296)


Alignment Details
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 20599503 - 20599421
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||||||||||||||||||||||| ||| ||| || ||||||||| ||| ||| |||||||| ||||||||||    
T  20599503 tcccgtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctc 20599421  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 6922745 - 6922663
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||| ||||||||||||||||| ||||||| | || | ||||||| |||| ||  || |||| ||||||||||    
T  6922745 tcccgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctc 6922663  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 12606651 - 12606728
Alignment:
Q  216 gtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttct 293  Q
    |||||||||||||||||||||||||| ||| ||||| | |||| |  |||  ||||||| ||| |||| |||||||||    
T  12606651 gtaagtgtagctcagttggtagctactagggataatttgtgtaggaatcgaggttcgaaccccagattccccacttct 12606728  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 21023795 - 21023758
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataat 251  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  21023795 ccgtaagtgtagctcaattggtagctaccagggataat 21023758  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 35130722 - 35130641
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttct 293  Q
    |||||||||||||| ||||||||||||||||||  ||||| | || | ||| ||| ||||||| ||||||||||||||||||    
T  35130722 tcccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttct 35130641  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 49479450 - 49479535
Alignment:
Q  209 tgatcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||| | |||| |||| || |||||||||||| |||||| |||||||    
T  49479450 tgatcccataagtgtagttcagttggtagctatcagaaataatttatgtaggggtaggggttcgaatcccgaatttccaacttctc 49479535  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 31351782 - 31351702
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||||||||||||||||||||  ||||| | || | ||||||| |||||||  |||||||||||| |||||    
T  31351782 ccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctc 31351702  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 40981895 - 40981815
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||||||||||||||| |||| ||||| | |||| ||||||||||| ||||| | ||||  |||||||||    
T  40981895 ccgtaagtgtagctcagttggtagctagcagggataatttatgtaggggtcggagtttgaatctcagattctccacttctc 40981815  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 13538366 - 13538284
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||||||||||||||||| |||  ||||| | |||| |||  |||||||||| |||  ||||||||||||||    
T  13538366 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctc 13538284  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 55967780 - 55967859
Alignment:
Q  215 cgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||| |||||| |||||| | ||||| | |||| ||| ||| ||||||| |||||||| ||||||||||    
T  55967780 cgtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaaccccggattccccacttctc 55967859  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 35010494 - 35010412
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||| |||||||||||||||||| |||  ||||| | || | | ||||| |||||||  ||||||||||||||||||    
T  35010494 tcccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctc 35010412  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 42657503 - 42657561
Alignment:
Q  216 gtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaa 274  Q
    ||||||||||||||||||||||||| |||  ||||| | | || |||||||||||||||    
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaa 42657561  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 50264100 - 50264019
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||| ||||||||||||||| |||| ||||| | || | ||| ||| | ||||| |||||||| ||||||||||    
T  50264100 tcccgtaagtgtaactcagttggtagcta-cagggataatttgtgcaggggccggggctcgaaacccggattccccacttctc 50264019  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 10601888 - 10601945
Alignment:
Q  237 gctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||| |||| ||||||||| ||| ||| ||| |||| ||||||||||    
T  10601888 gctaccaggaataatttttgcaagggtcggggtttgaaccccagattccccacttctc 10601945  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 45872386 - 45872415
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctac 241  Q
    ||||||||||||||||||||||||||||||    
T  45872386 tcccgtaagtgtagctcagttggtagctac 45872415  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 40098015 - 40097948
Alignment:
Q  215 cgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatt 283  Q
    |||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||||    
T  40098015 cgtacgtgtagctcagttggtagctactaggaataatttttgtaggggtcggagtttgaa-cccggatt 40097948  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 9667342 - 9667260
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||||||||||||||||| |||  ||||| | |||| |||  |||||||||| |||  ||||||||||||||    
T  9667342 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctc 9667260  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 45664673 - 45664736
Alignment:
Q  211 atcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaa 274  Q
    ||||||||||||||||||||||||||||||| ||  ||||| |||||| |||| || |||||||    
T  45664673 atcccgtaagtgtagctcagttggtagctactagagataatgtttgtaggggttggggttcgaa 45664736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 36877079 - 36877001
Alignment:
Q  216 gtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||  |||||||||||||||| || | ||||| | || | ||||||| ||||||| |||||||||||||||||||    
T  36877079 gtaagtgatgctcagttggtagctaacatggataatttgtgcaggggtcggggttcgaaccccggatttcccacttctc 36877001  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 19554704 - 19554765
Alignment:
Q  213 cccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaa 274  Q
    ||||||||||||||||||||||||||||||| | | |||||||| | ||||||  |||||||    
T  19554704 cccgtaagtgtagctcagttggtagctaccaaggacaatatttgcaggggtcgtggttcgaa 19554765  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 32958486 - 32958557
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatt 283  Q
    ||||||||||||||||| ||||||||||||||  |||||| | || | | ||| ||||||||| ||||||||    
T  32958486 tcccgtaagtgtagctcggttggtagctaccaaaaataatttgtgcaggagtcagagttcgaaccccggatt 32958557  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 13054605 - 13054674
Alignment:
Q  225 gctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||| ||||||||||||||| | ||||| || | ||| ||| ||||||| ||| |||||||||||||||    
T  13054605 gctcaattggtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccacttctc 13054674  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 45967472 - 45967443
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctac 241  Q
    ||||||||||||||||||||||||||||||    
T  45967472 tcccgtaagtgtagctcagttggtagctac 45967443  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 44165995 - 44165959
Alignment:
Q  215 cgtaagtgtagctcagttggtagctaccaggaataat 251  Q
    |||||||| |||||||||||||||||||||| |||||    
T  44165995 cgtaagtgcagctcagttggtagctaccagggataat 44165959  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 3313490 - 3313572
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||| ||||||||||||||||||| | | |||||||| | | | ||||||||||||||  |||| ||||||||||    
T  3313490 tcccgtaagtgtggctcagttggtagctaccaaggacaatatttgcaggagccggagttcgaatcctagattccccacttctc 3313572  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 7950929 - 7950971
Alignment:
Q  213 cccgtaagtgtagctcagttggtagctaccaggaataatattt 255  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  7950929 cccgtaagtgtagctcagttggtagctaccagggataatattt 7950971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 51816021 - 51816058
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataat 251  Q
    |||||||||||||||||||||||||||||||| |||||    
T  51816021 ccgtaagtgtagctcagttggtagctaccagggataat 51816058  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 32594563 - 32594639
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccact 290  Q
    |||||||||||| ||||||||||| ||  ||||||||| | ||||  |||||| ||||||| |||| ||||||||||    
T  32594563 ccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaaccccgaatttcccact 32594639  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 51829663 - 51829633
Alignment:
Q  216 gtaagtgtagctcagttggtagctaccagga 246  Q
    |||||||||||||||||||||||||||||||    
T  51829663 gtaagtgtagctcagttggtagctaccagga 51829633  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 54240605 - 54240683
Alignment:
Q  216 gtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||| |||||||||||||| |||||||| | | ||||| || | ||||||| ||||||| | ||||||| |||||||||    
T  54240605 gtaaatgtagctcagttggcagctaccaaggacaatatgtgcaggggtcggggttcgaacctcggattttccacttctc 54240683  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 21177150 - 21177113
Alignment:
Q  207 tttgatcccgtaagtgtagctcagttggtagctaccag 244  Q
    ||||||||||||||| || |||||||||||||||||||    
T  21177150 tttgatcccgtaagtatacctcagttggtagctaccag 21177113  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 33439978 - 33440050
Alignment:
Q  217 taagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccac 289  Q
    ||||||||||||| |||||||||| ||| |||||| | |||| ||||||| ||| |||| ||| |||| ||||    
T  33439978 taagtgtagctcacttggtagctatcagaaataatttgtgtaggggtcggggtttgaattccgaattttccac 33440050  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 55009521 - 55009601
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||||| ||||||||||  ||| ||||| | ||||  |  ||| ||||||| |||||||||| ||||||||    
T  55009521 ccgtaagtgtagctcaattggtagctattagggataatttgtgtagagaccggggttcgaaccccggatttctcacttctc 55009601  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 7550009 - 7550091
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||||||||||| ||||||||||  | | |||||| | ||| ||| ||||||| |||||||| ||||||||||    
T  7550009 tcccgtaagtgtagctcagttgatagctaccagagacattatttgcaggggccggggttcgaaccccggattccccacttctc 7550091  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 44729823 - 44729887
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatccc 278  Q
    |||||||||||| ||||||| ||||||||||  ||||| ||| ||||||| || |||| ||||||    
T  44729823 ccgtaagtgtagttcagttgatagctaccagagataatgtttataagggttggggttcaaatccc 44729887  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 36730290 - 36730211
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    |||||||||||||||||||||||||||||||| | |||||||| | ||| | || || ||| |||||||| ||||||||||    
T  36730290 ccgtaagtgtagctcagttggtagctaccagggacaatatttgcaggggccaga-tttgaaccccggattccccacttctc 36730211  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 43406112 - 43406053
Alignment:
Q  215 cgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaa 274  Q
    ||||||||||||||||||||||||||||||  ||||| | || ||||  |||||||||||    
T  43406112 cgtaagtgtagctcagttggtagctaccagagataatttgtgcaaggaccggagttcgaa 43406053  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 31069002 - 31068922
Alignment:
Q  214 ccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||||||||||||||||||||||| ||   ||||| | |||| ||||||||||| |||  ||||||| ||||||||||    
T  31069002 ccgtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccacttctc 31068922  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 34028097 - 34028165
Alignment:
Q  215 cgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatt 283  Q
    |||||||||||||||||| |||||||||||| ||||| |||| | ||||||||||| |||  |||||||    
T  34028097 cgtaagtgtagctcagttagtagctaccagggataatttttgcaggggtcggagtttgaactccggatt 34028165  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 9199041 - 9199009
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccag 244  Q
    |||||||||||||||||||||||||||||||||    
T  9199041 tcccgtaagtgtagctcagttggtagctaccag 9199009  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 28300084 - 28300166
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccacttctc 294  Q
    ||||||| ||||||||||||||||||||||||   ||||| | || | ||| ||| ||||||| |||||||| ||||||||||    
T  28300084 tcccgtaggtgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctc 28300166  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 12959704 - 12959783
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccaggaataatatttgtaagggtcggagttcgaatcccggatttcccactt 291  Q
    ||||||||||||||||||||||||||||| |||| ||||  | || | |||| || ||||||| ||| |||| |||||||    
T  12959704 tcccgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccactt 12959783  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 9209674 - 9209641
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccagg 245  Q
    ||||||||||||||||| ||||||||||||||||    
T  9209674 tcccgtaagtgtagctccgttggtagctaccagg 9209641  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 31441264 - 31441296
Alignment:
Q  212 tcccgtaagtgtagctcagttggtagctaccag 244  Q
    ||||||| |||||||||||||||||||||||||    
T  31441264 tcccgtaggtgtagctcagttggtagctaccag 31441296  T

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