View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_high_42 (Length: 290)
Name: NF3140_high_42
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1076750 - 1076471
Alignment:
| Q |
1 |
tcttgttggtcttcatctctctcttcggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaacttttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076750 |
tcttgttggtcttcatctctctcttcggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaacttttgta |
1076651 |
T |
|
| Q |
101 |
ggacaaaattcaaacaaataacnnnnnnnnggacgaaatttccatgtaatcataatgttttgcgatgtggtatttattatggcaaattcttatttatcat |
200 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076650 |
ggacaaaattcaaaaaaataacttttttttggacgaaatttccatgtaatcataatgttttgcgatgtggtatttattatggcaaattcttatttatcat |
1076551 |
T |
|
| Q |
201 |
tattacatgtaaagtcctagcagaggcattagatcatgcaacatttcagcagggttaatttgttgaacattttcttcatt |
280 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
1076550 |
tattacatgcaaagtcctagcagaggcattagatcatgcaacatttcagtgggtttaatttgttgaacattttcttcatt |
1076471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1049834 - 1049557
Alignment:
| Q |
1 |
tcttgttggtcttcatctctctcttcggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaacttttgta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
1049834 |
tcttgttggtcttcatctttctcttcggttaaagtgttgatctctgaattttcttccatatgtaaatggcgtcaatgcaatattgacataaatttttgta |
1049735 |
T |
|
| Q |
101 |
ggacaaaattcaaacaaataacnnnnnnnnggacgaaatttccatgtaatcataatgttttgcgatgtggta----tttattatggcaaattcttattta |
196 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
1049734 |
ggacaaaattcaaaaaaataaatttttgttggacaaaatttccatgtaatcataatgttttgcgatgtggtaaattcttattatggctaattctta--ta |
1049637 |
T |
|
| Q |
197 |
tcattattacatgtaaagtcctagcagaggcattagatcatgcaacatttcagcagggttaatttgttgaacattttctt |
276 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||||||||||||| |||||| | || | |||||||||||||||||||| |
|
|
| T |
1049636 |
tcattgttacatgcaaagtcctagaagaggtattagatcatgcatcatttcggtgggttaaatttgttgaacattttctt |
1049557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 1300376 - 1300505
Alignment:
| Q |
151 |
cataatgttttgcgatgtggtatttattatggcaaattcttatttatcattattacatgtaaagtcctagcagaggcattagatcatgcaacatttcagc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300376 |
cataatgttttgcgatgtggtatttattatggcaaattcttatttatcattattacatgcaaagtcctagcagaggcattagatcatgcaacatttcagt |
1300475 |
T |
|
| Q |
251 |
agggttaatttgttgaacattttcttcatt |
280 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
1300476 |
gggtttaatttgttgaacattttcttcatt |
1300505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 1300270 - 1300377
Alignment:
| Q |
1 |
tcttgttggtcttcatctctctctt---cggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaactttt |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300270 |
tcttgttggtcttcatctctctcttcttcggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaactttt |
1300369 |
T |
|
| Q |
98 |
gtaggaca |
105 |
Q |
| |
|
|||||||| |
|
|
| T |
1300370 |
gtaggaca |
1300377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 1090556 - 1090396
Alignment:
| Q |
1 |
tcttgttggtcttcatctctctcttcggttaaggtgttgatctctgcattatcttccatatgtaaatggtgtcgatgcaatattgtcataaacttttgta |
100 |
Q |
| |
|
|||||||||||||||| | | ||||||||| ||||| ||||||| ||||||||||||| ||||||| ||| ||||||||||| |||||| |||| | |
|
|
| T |
1090556 |
tcttgttggtcttcatattttatttcggttaaagtgttcatctctgaattatcttccataagtaaatgacgtcaatgcaatattggcataaaattttttt |
1090457 |
T |
|
| Q |
101 |
ggacaaaattcaaacaaataacnnnnnnnnggacgaaatttccatgtaatcataatgtttt |
161 |
Q |
| |
|
|||||||||| || |||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
1090456 |
ggacaaaattttaaaaaataaatttttgttggacaaaatttcgatgtaatcataatgtttt |
1090396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 1089717 - 1089627
Alignment:
| Q |
190 |
ttatttatcattattacatgtaaagtcctagcagaggcat----tagatcatgcaacatttcagcagggttaatttgttgaacattttctt |
276 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| ||||| |||||||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
1089717 |
ttatttactattattacatgcaaagtcctggcagcggcatgcattagatcatgcaacatttcagttggtttaaattgttgaacattttctt |
1089627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University