View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_50 (Length: 250)
Name: NF3140_high_50
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 20472454 - 20472690
Alignment:
| Q |
4 |
cttagatatctttctgaattccaataaatcatgcttgtgcatgggtatggagatttaatatatgttgttattttgcaagtactcattttctaattcttct |
103 |
Q |
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| T |
20472454 |
cttagatatctttctgaattccaataaatcatgcttgtgcatgggtatggagatttaatatatgttgttattttgcaagtactcattttctaattcttct |
20472553 |
T |
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| Q |
104 |
tatatagtaaaaatcactttcatatggagtgaaacatggaaacaatgttgctgaagagacttaaactttgttggnnnnnnnnccgacaaggaataccaaa |
203 |
Q |
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| T |
20472554 |
tatatagtaaaaatcactttcatatggagtgaaacatggaaacaatgttgctgaagagactt-aactttgttggaaaaaaaaccaacaaggaataccaaa |
20472652 |
T |
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| Q |
204 |
aatagattttctaataataatcgctgatacattcatct |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20472653 |
aatagattttctaataataatcgctgatacattcatct |
20472690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 20460640 - 20460792
Alignment:
| Q |
1 |
tttcttagatatctttctgaattccaataaatcatgcttgtgcatgggtatggagatttaatatatgttgttattttgcaagtactcattttctaattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
20460640 |
tttcttagatatctttctgaattccaataaatcatgtttgttcatgggtatggatatttaatatatgttgttattttgcaggcactcattttctaattct |
20460739 |
T |
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| Q |
101 |
tcttatatagt-aaaaatcactttcatatggagtgaaacatggaaacaatgtt |
152 |
Q |
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| T |
20460740 |
tcgtaaattttaaaaaatcactttcatatagagtgaaacatggaaacagtgtt |
20460792 |
T |
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