View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_56 (Length: 241)
Name: NF3140_high_56
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 39582087 - 39581870
Alignment:
| Q |
8 |
agagaagaaagctctaatcaaatagaatcgatccattataattttgtcnnnnnnntataaatccactgtaatgataagctaattaattagttgatgttag |
107 |
Q |
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| T |
39582087 |
agagaagaaagctctaatcaaatagaatcgatccattataattttgtcaaaaaaatataaatccactgtaatgataagctaattaattagttgatgttag |
39581988 |
T |
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| Q |
108 |
tgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagcacga |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581987 |
tgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagcacga |
39581888 |
T |
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| Q |
208 |
tggtcatggccgtttttg |
225 |
Q |
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|||||||||||||||||| |
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| T |
39581887 |
tggtcatggccgtttttg |
39581870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 39565811 - 39565942
Alignment:
| Q |
91 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg |
190 |
Q |
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|||||||||||||||||||| ||||||| | ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
39565811 |
taattagttgatgttagtgcctatatacgtagcataatcttgcatcaaaactaaaaagcctccaaagcg---ccaaacgcaaatatatcacactcttctg |
39565907 |
T |
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| Q |
191 |
cgcagcaccaagcacgatggtcatggccgtttttg |
225 |
Q |
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| T |
39565908 |
cgcagcaccaagcacgatggtcatggccgtttttg |
39565942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 39585643 - 39585546
Alignment:
| Q |
91 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttc |
188 |
Q |
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| T |
39585643 |
taattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttc |
39585546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 39568477 - 39568603
Alignment:
| Q |
99 |
tgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcac |
198 |
Q |
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|||||||||| ||||||| ||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
39568477 |
tgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcac |
39568576 |
T |
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| Q |
199 |
caagcacgatggtcatggccgtttttg |
225 |
Q |
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|||||| ||| ||||| || |||||| |
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| T |
39568577 |
caagcattatgatcatgaccatttttg |
39568603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 39575429 - 39575310
Alignment:
| Q |
105 |
tagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagca |
204 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| | | ||||||||| |
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| T |
39575429 |
tagtgcatatatacatcacatatttttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcagtgttgcaccaagct |
39575330 |
T |
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| Q |
205 |
cgatggtcatggccgttttt |
224 |
Q |
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||||| ||||| || ||||| |
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| T |
39575329 |
cgatgatcatgaccattttt |
39575310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 39571286 - 39571420
Alignment:
| Q |
91 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg |
190 |
Q |
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|||||||||||| | | |||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| | |
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| T |
39571286 |
taattagttgatatcggggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcag |
39571385 |
T |
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| Q |
191 |
cgcagcaccaagcacgatggtcatggccgtttttg |
225 |
Q |
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| | ||||||||| |||| ||||| || |||||| |
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| T |
39571386 |
cactgcaccaagcttgatgatcatgaccatttttg |
39571420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 39561138 - 39561226
Alignment:
| Q |
130 |
ttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagcacgatggtcatggcc |
218 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||| ||||||||| |||| |||||||| |
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| T |
39561138 |
ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgatcatggcc |
39561226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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