View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_59 (Length: 229)
Name: NF3140_high_59
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5174733 - 5174943
Alignment:
| Q |
1 |
cgaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaattgattaa |
100 |
Q |
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| T |
5174733 |
cgaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaattgattaa |
5174832 |
T |
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| Q |
101 |
tgtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatcttttataata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174833 |
tgtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatcttttataata |
5174932 |
T |
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| Q |
201 |
atgttacaaat |
211 |
Q |
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||||||||||| |
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| T |
5174933 |
atgttacaaat |
5174943 |
T |
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Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 52002537 - 52002731
Alignment:
| Q |
2 |
gaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaattgattaat |
101 |
Q |
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||||||||| || |||| ||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002537 |
gaaaagaagagacgtatgcaatatgcttataatacttggttaaggacgaaaaacaaagttcaattgctgatgacaatatatgaaaagcaaattgattaat |
52002636 |
T |
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| Q |
102 |
gtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatcttttat |
196 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
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| T |
52002637 |
gtgagaaaagaaaaaggtgttcagtatttggatttaatttgatcaaatatcaagtaaagatttagtggaaacaaaccgtagaatctatcttttat |
52002731 |
T |
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