View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_64 (Length: 213)
Name: NF3140_high_64
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 37762310 - 37762419
Alignment:
| Q |
20 |
gacccttcatgtgtctatctgtcattgtcgaataataaattaaattacnnnnnnnnnnnnnnnn---tggcaccaataataatgaagatggtaaagagaa |
116 |
Q |
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| T |
37762310 |
gacccttcatgtgtctatctgtcattgtcgaataataaattaaattacaaaaaaaaaaaaaaaaaaatggcaccaataataatgaagatggtaaagagaa |
37762409 |
T |
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| Q |
117 |
agacgtgatg |
126 |
Q |
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|||||||||| |
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| T |
37762410 |
agacgtgatg |
37762419 |
T |
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