View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_7 (Length: 578)
Name: NF3140_high_7
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 945278 - 945642
Alignment:
| Q |
12 |
aattctattattgttttctcattagttttctgattattttttaatcaagtaataaggaaatggtatacaaatttttcttaagtgtttagagagaagttta |
111 |
Q |
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| T |
945278 |
aattctattattgttttctcattagttttctgattattttttaatcaagtaataaggaaatggtatacaaatttttcttaagtgtttagagagaagttta |
945377 |
T |
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| Q |
112 |
ttcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctactttaaacaaacttctaacaagttgattattatacacta |
211 |
Q |
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| T |
945378 |
ttcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctactttaaacaaacttc-aacaagttgattattatacacta |
945476 |
T |
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| Q |
212 |
aacttaagagatacattgtgatgttgatttaagaatatattcatgcagatatttggagtaataattggtatagttcctcaatttcgaaaactattagttg |
311 |
Q |
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| T |
945477 |
aacttaagagatacattgtgatgttgatttaagaatatattcatgcagatgtttggagtaataattggtatagttcctcaatttcgaaaactactagttg |
945576 |
T |
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| Q |
312 |
gtcaaagtgctcctcttcatgtcgttcaaacctctatagttatgttggggtgagtatcctctacca |
377 |
Q |
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| T |
945577 |
gtcaaagtgctcctctccatgtcgttcaaacctctatagttatgttggggtaagtatcctcaacca |
945642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 4098254 - 4098525
Alignment:
| Q |
12 |
aattctattattgttttctcattagttttctgattat-tttttaatcaa-gtaataaggaaa-tggtatacaaatttttcttaagtgtttagagagaagt |
108 |
Q |
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| T |
4098254 |
aattctattactgttttatcattagtttttattttttatttttaatcaaagtaataaggaaaatggtatacaaatttttcttaagtgtttagagagaagt |
4098353 |
T |
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| Q |
109 |
ttattcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctac-------tttaaacaaacttctaacaagttgatta |
201 |
Q |
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||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||| |
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| T |
4098354 |
ttattcaaactaactcccatcactaattgttcatttgatatgcttgagttaatgttaacgtctactttaaagtttaaacaaacttc-aactagttgattg |
4098452 |
T |
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| Q |
202 |
ttatacactaaacttaagagatacattgtgat-gttgatttaagaatatattcatgcagatatttggagtaat |
273 |
Q |
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| T |
4098453 |
ttatacactaatcttaagagatacattgtgatctttgatttaagaatatattcatgcagatttttggagtaat |
4098525 |
T |
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