View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_high_9 (Length: 514)
Name: NF3140_high_9
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Complemental strand, 31028141 - 31027649
Alignment:
| Q |
16 |
ataacaaacgttgtcctcaacacaatacataggtaatgctgtaatgtataacaaaatgttatcagtataaacgatggaggacaaaaatgtacgtataaga |
115 |
Q |
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| T |
31028141 |
ataacaaacgttgtcctcaacacaatacataggtaatgttgtaatgtataacaaaatgttatcagtataaac-atggaggataaaaatgtacgtataaga |
31028043 |
T |
|
| Q |
116 |
taaagcaaaaaaggattagtgaaaggtcataccagagctttcatcccttacaacaaaaaatatggaaatcaagaagatcgtagcataaannnnnnngaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31028042 |
taaagcaaaaaaggattagtgaaaggtcataccagagctttcatcccttacaacaaaaaatatggaaatcaagatgatcgtagcataaaaaaatttgaga |
31027943 |
T |
|
| Q |
216 |
aacttaatcatannnnnnnnnctccttttgatgttaaaaagataaatgtttatatcaatttatttataatggannnnnnnagagccaatcgagatgcaag |
315 |
Q |
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| T |
31027942 |
aacttaatcatatttttttttctccttttgatgttaaaaagataaatgtttatatcaatttatttataatggatttttttagagccaatcgagatgcaag |
31027843 |
T |
|
| Q |
316 |
aaatgattttgtcttttacatacattcatttgtcatgtttgtcccttaatatcactcaataaaaaatctaacataaataaattttatcaacttttcatta |
415 |
Q |
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| T |
31027842 |
aaatgattttgtcttttacatacattcatttgtcatgtttgtcccttaatatcactcaataaaaaatctaacataaatatattttatcaacttttcatta |
31027743 |
T |
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| Q |
416 |
cctttaatctcttttataacttttcatgatagacaacaaatatccaaaatc---aacatcatagtattgaaagataacaagtcatgagaataat |
506 |
Q |
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| T |
31027742 |
cctttaatctcttttataacctttcatgatagacaacaaatatccaaaatcaacaacatcatagtattgcaagataacaagtcatgagaataat |
31027649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 31038094 - 31038012
Alignment:
| Q |
311 |
gcaagaaatgattttgtcttttacatacattcatttgtcatgtttgtcccttaatatcactcaataaaaaatctaacataaat |
393 |
Q |
| |
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|||| |||| |||| |||||||||||| |||||| |||||||||||||| || |||| ||||||||| | |||||||||||| |
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| T |
31038094 |
gcaataaatcatttggtcttttacatatattcatgtgtcatgtttgtccttttatatggctcaataaacagtctaacataaat |
31038012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 378
Target Start/End: Original strand, 31033078 - 31033216
Alignment:
| Q |
240 |
cttttgatgttaaaaagataaatgtttatatcaatttatttataatggannnnnnnagagccaatcgagatgcaagaaatgattttgtcttttacataca |
339 |
Q |
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| T |
31033078 |
cttttgatgtaaaaaagataaatttgtgtattaatttatatataatgatttttttcagaactaatggagatgcaaaaaatgattttgtcttttatgtaca |
31033177 |
T |
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| Q |
340 |
ttcatttgtcatgtttgtcccttaatatcactcaataaa |
378 |
Q |
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| T |
31033178 |
tacatgagtcatgtttacccctttagatcactcaataaa |
31033216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 31032965 - 31033029
Alignment:
| Q |
124 |
aaaaggattagtgaaaggtcataccagagctttcatcccttacaacaaaaaatatggaaatcaag |
188 |
Q |
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| T |
31032965 |
aaaaggatgagagaaaggtcatacctgagttaccgtgccttacaacaaaaaatgtggaaatcaag |
31033029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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