View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_11 (Length: 483)
Name: NF3140_low_11
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 42094744 - 42095225
Alignment:
| Q |
18 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaattacatgttgtcaagcaagataagatacta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42094744 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaattacatgttatcaagcaagataagatacta |
42094843 |
T |
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| Q |
118 |
caacaaatatcagcgacagaggatgtactatagacaaagaagtggaaaacaacaaaatatatacagcttcaaatcaaggcaagcctgatgcaaacacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42094844 |
caacaaatatcagcgacagaggatgtactatagacaaagaagtggaaaacaacaaaatatatacagcttcaaatcaaggcaagcctgatgcaaacacaat |
42094943 |
T |
|
| Q |
218 |
gtttc--------------aaaaaggaaagagttaaaagtgaaaaacatgaaggggaaagaaacttgtcaaagcattaccttctcatcaaagcttcactc |
303 |
Q |
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| T |
42094944 |
gtttcaaaaaacaggacagaaaaaggaaagagttaaaagtgaaaaacatgaaggggaaagaaacttgtcaaagcatcaccttctcatcaaagcttcactc |
42095043 |
T |
|
| Q |
304 |
tccatcatcatcttcaacatatgaactcaaacctagt--cactaactataagagaagttacagttcctaaagaaacnnnnnnnnnntgctgagtataaat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42095044 |
tccatcatcatcttcaacatatgaactcaaacctagtcacactaactataagagaagttacagttcctaaagaaacaaaaaaaatatgctgagtataaat |
42095143 |
T |
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| Q |
402 |
tgtgtgagaagaaaatagtaaaattgacacaacattagtcgaaattgagattatgagagccccttccccttcgaaaaatatc |
483 |
Q |
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| T |
42095144 |
tgtgtgagaaggaaatagtaaaattgaaacaacattagtcgaacttgagattatgagtgccccttccccttcgaaaaatatc |
42095225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 6958009 - 6957875
Alignment:
| Q |
32 |
agattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaattacatgttgtcaagcaagataagatactacaacaaatatcagc |
131 |
Q |
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|||||||||||||| |||||||||| | |||| ||||||||||||||| | ||||| ||| |||||||||||||| | ||||||||||||| | |
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| T |
6958009 |
agattcatatgttcctttcaaaaacaga-atcaaatgttaaataattaacatgtaat-acacaatgtcaagcaagata-----caacaacaaatatcatc |
6957917 |
T |
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| Q |
132 |
gacagaggatgtactatagacaaagaagtggaaaacaacaaa |
173 |
Q |
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| T |
6957916 |
aacacatgatgtactatagacaaagaagtgaaaaacaacaaa |
6957875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 4352183 - 4352122
Alignment:
| Q |
109 |
aagatactacaacaaatatcagcgaca---gaggatgtactatagacaaagaagtggaaaac |
167 |
Q |
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| T |
4352183 |
aagatactacaacaaatattagcaacataggaggaggtactatagacaaagaagtgaaaaac |
4352122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 48909189 - 48909302
Alignment:
| Q |
223 |
aaaaaggaaagagttaaaagtgaaaaacatgaaggggaaagaaacttgtcaaagcattaccttctcatcaaagcttcactctccatcatcatcttcaaca |
322 |
Q |
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|||||||||| || |||||||||| | |||||||||||||||| ||||||| | | |||||||||||||| |||||||| |||||||||||||| |
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| T |
48909189 |
aaaaaggaaatagaaaaaagtgaaatagctgaaggggaaagaaacccgtcaaagggtcatcttctcatcaaagcctcactctc---catcatcttcaaca |
48909285 |
T |
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| Q |
323 |
tatgaactcaaacctag |
339 |
Q |
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| T |
48909286 |
tttgaactcaagcctag |
48909302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1660907 - 1660962
Alignment:
| Q |
18 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
73 |
Q |
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| T |
1660907 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
1660962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 35164154 - 35164099
Alignment:
| Q |
18 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
73 |
Q |
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| T |
35164154 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
35164099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 35361044 - 35361100
Alignment:
| Q |
275 |
agcattaccttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaa |
334 |
Q |
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| T |
35361044 |
agcatcaccttctcatcaaagtctcactct---tcatcatcttcaacctatgaactcaaa |
35361100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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