View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_12 (Length: 477)
Name: NF3140_low_12
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Original strand, 43909148 - 43909596
Alignment:
| Q |
13 |
gaacataatgccctatgatattttttgtaaatttggattggatatttcttatgtttgttcattctccatatgggtactgtatagactctattgctatgtt |
112 |
Q |
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| T |
43909148 |
gaacataatgccctatgatattttttgtaactttggattggatatttcttatgtttgttaattctccatatgggtgctgtatagactctattggtatgtt |
43909247 |
T |
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| Q |
113 |
tgtattttaagatttgaatcaggatatatgataaattgatcacctagactatagtttt-gacccaattagtcagtacaattttttataaggcatttcagt |
211 |
Q |
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| T |
43909248 |
tgtattttaagatttgaatcaggatatatgataaattgatcgtctagactatagtttttgacccaattagtcagtacaattttttataaggcatttcagt |
43909347 |
T |
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| Q |
212 |
tgtcatcttatgtgttgtagtccaatgtaagtaatcaattcttcattcttacatacatcagttatctaacatttccctttacaattttataaatagcaaa |
311 |
Q |
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| T |
43909348 |
tgttatcttatgtgttgtagtccaatgtaagtaatcaattcttcattcttacatacatcagttatctaacatttccctttacaattttataaatagcaaa |
43909447 |
T |
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| Q |
312 |
tgctctcaaacctttatatacaaacatggttgtctgtaagattttgacatgatacaatcaccatgctaatttcaacaaaatgcaattttgtaatatttta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43909448 |
tgctctcaaacctttatatacaaacatggttgtctgtaagattttgacatgatacaatcaccatgctaatttcaac-aaatgcaattttgtaatatttta |
43909546 |
T |
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| Q |
412 |
gcaattcaaatacaagattggtttatgatgttgattagcccagtccactt |
461 |
Q |
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| T |
43909547 |
gcaattcaaatacaagattggtttatgatgttgattagcccagtccactt |
43909596 |
T |
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