View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_low_16 (Length: 451)
Name: NF3140_low_16
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 43909152 - 43908712
Alignment:
| Q |
1 |
tgttcttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatcatttcaggtact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43909152 |
tgttcttctgagagatgctagacgatccgacaagtcctcataatctggtagactaggatgcacatgccctgtggttgttgtcctcatcatttcaggtact |
43909053 |
T |
|
| Q |
101 |
aaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43909052 |
aaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaacttg |
43908953 |
T |
|
| Q |
201 |
atttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttcttaacgtatcgcattaaaagtccatctaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43908952 |
atttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttgttaacgtatcgcattaaaagtccatctaa |
43908853 |
T |
|
| Q |
301 |
tatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatcttggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43908852 |
tatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatcttggt |
43908753 |
T |
|
| Q |
401 |
ttcggcttttcagcaggtagagcttcaactgttttcttcat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43908752 |
ttcggcttttcagcaggtagagcttcaactgttttcttcat |
43908712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University