View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_17 (Length: 451)
Name: NF3140_low_17
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 33203352 - 33202918
Alignment:
| Q |
1 |
gtaaatttctgaggtattattggtgtttttcaagaggggtattatgggagttgaagagtcgtcttgtaaacctaaatctttcatgatggaatcccaccaa |
100 |
Q |
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| T |
33203352 |
gtaaatttctgaggtattattggtgtttttcaagaggggtattatgggagttgaagagtcgtcttgtaaacctaaatctttcatgatggaatcccaccaa |
33203253 |
T |
|
| Q |
101 |
tccaaatttggcaaggaagcatgatcctcttgttccacttctggattatgttcttgttcttgttgagatggtttcttttctgggctagggctacgacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33203252 |
tccaaatttggcaaggaagcatgatcctcttgttccacttctggattatgttcttgttcttgttgagatggtttcttttctgggctagggctacgacaaa |
33203153 |
T |
|
| Q |
201 |
gctcgagaacggacctcggttcgtagcacaacgtggtggttgtcggtgttggtgttgggttgggagttgggacgttaacgacgatgttttgagtggtggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33203152 |
gctcgagaacggacctcggttcgtagcacaacgtggtggttgtcggtgttggtgttgggttgggagttgggacgttaacgacgatgttttgagtggtggt |
33203053 |
T |
|
| Q |
301 |
gagttttggttgtggtgacgacgacgaggaggaaactgcaggaggaggaactctcattgctggctataggagaaaggtaagaaaatgagaaaagatgtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33203052 |
gagttttggttgtggtgacgacgacgaggaggaaactgcaggaggaggaactctcattgctggctataggagaaaggtaagaaaatgagaaaagatgtta |
33202953 |
T |
|
| Q |
401 |
ttgttatgataatgcctttgttgtgatgagaattg |
435 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
33202952 |
ttgttatgataatgcctttgctgtgatgagaattg |
33202918 |
T |
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