View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_low_19 (Length: 419)
Name: NF3140_low_19
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_19 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 960898 - 960513
Alignment:
| Q |
11 |
cataggcacacaaacttgtaaccctaaaccataatttaacatggtacacatattgcaggttttataatttaaaatatttaaagtagttgctatatagtgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
960898 |
cataggcacacaaacttgtaaccctaaaccataatttaacatggtacacataatgcaggttttataatttaaaatatttaaagtagttgctatatagtgc |
960799 |
T |
|
| Q |
111 |
tcattattcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaac |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
960798 |
tcattattcaaggatacaac---tattgatgaaagaggttatattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaac |
960702 |
T |
|
| Q |
211 |
agtccctggttgaactttaagcactagaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttcca |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
960701 |
agtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttcca |
960602 |
T |
|
| Q |
311 |
tcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
960601 |
tcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgaca |
960513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 942929 - 942552
Alignment:
| Q |
18 |
acacaaacttgtaaccctaaaccataatttaacatggtacacatattgcaggttttataatttaaaatatttaaagtagttgctatatagtgctcattat |
117 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
942929 |
acacaaacttgtaagcataaaacataatttaacatggtacacatgta-catgttttataatttaaaatatttaaagtagttgctatatagtgctcattat |
942831 |
T |
|
| Q |
118 |
tcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccct |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942830 |
tcaaggatacaac---tattgatgaaagaggttatattttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccct |
942734 |
T |
|
| Q |
218 |
ggttgaactttaagcactagaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacac |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
942733 |
ggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacac |
942634 |
T |
|
| Q |
318 |
cttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
942633 |
cttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgaca |
942552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 85 - 399
Target Start/End: Complemental strand, 949850 - 949541
Alignment:
| Q |
85 |
tatttaaagtagttgctatatagtgctcattattcaaggatacaacaactattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcc |
184 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
949850 |
tatttaaagtagttgctata--gcactcattattcaaggatacaac---tattgatgaaagaggttctattttcacttggaaacccaaacaacatgatcc |
949756 |
T |
|
| Q |
185 |
tgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
949755 |
tgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaa |
949656 |
T |
|
| Q |
285 |
caacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
949655 |
caacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaaaaactgtgtaagggta |
949556 |
T |
|
| Q |
385 |
attctctttgtgaca |
399 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
949555 |
attctctttgtgaca |
949541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 161 - 399
Target Start/End: Complemental strand, 972060 - 971822
Alignment:
| Q |
161 |
ttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
972060 |
ttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattcc |
971961 |
T |
|
| Q |
261 |
attctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
971960 |
attctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatg |
971861 |
T |
|
| Q |
361 |
acagtaaaaaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971860 |
acagtaaaaaactgcataagggtaattctctttgtgaca |
971822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 159 - 399
Target Start/End: Complemental strand, 936872 - 936632
Alignment:
| Q |
159 |
acttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggtt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||| |||||||| || |||||||| || |||||| ||||||||||||||||||| || |
|
|
| T |
936872 |
acttggaaacccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggatt |
936773 |
T |
|
| Q |
259 |
ccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagtttta |
358 |
Q |
| |
|
||||| ||| |||||||||||||| ||| ||| || |||||| | |||||||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
936772 |
ccattgtgaagtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagtttta |
936673 |
T |
|
| Q |
359 |
tgacagtaaaaaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
936672 |
tgacagtaaaaaactgcataagggtaactctctttgtgaca |
936632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 399
Target Start/End: Original strand, 419496 - 419726
Alignment:
| Q |
169 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttccattctgat |
268 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
419496 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat |
419595 |
T |
|
| Q |
269 |
gtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaa |
368 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| |||||||||| |
|
|
| T |
419596 |
gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa |
419695 |
T |
|
| Q |
369 |
aaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
419696 |
acactgcataagggtaattctctttgtgaca |
419726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 399
Target Start/End: Complemental strand, 975665 - 975435
Alignment:
| Q |
169 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttccattctgat |
268 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
975665 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat |
975566 |
T |
|
| Q |
269 |
gtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaa |
368 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| |||||||||| |
|
|
| T |
975565 |
gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa |
975466 |
T |
|
| Q |
369 |
aaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
975465 |
acactgcataagggtaattctctttgtgaca |
975435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 388
Target Start/End: Complemental strand, 910121 - 909887
Alignment:
| Q |
154 |
ttttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgttta |
253 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||| | |||||||| |||| |||| ||| ||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
910121 |
tttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgttta |
910022 |
T |
|
| Q |
254 |
gggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcag |
353 |
Q |
| |
|
|| |||||| ||| ||||||| ||| |||| | ||| || |||||| | |||||||| ||||||| || |||||||||||||||| ||||| ||| | |
|
|
| T |
910021 |
aggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctg |
909922 |
T |
|
| Q |
354 |
ttttatgacagtaaaaaactgcataagggtaattc |
388 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
909921 |
ttttgtgacagtaaaaaactgcataagggtaattc |
909887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 347
Target Start/End: Complemental strand, 924644 - 924461
Alignment:
| Q |
164 |
gaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttccatt |
263 |
Q |
| |
|
|||| ||||||||||||| ||||||| | || ||| |||| |||||||| || ||||||| ||| || ||| ||||||||||||||||||| |||||| |
|
|
| T |
924644 |
gaaaaccaaacaacatgaccctgtggtaagaagtggcaaactggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccatt |
924545 |
T |
|
| Q |
264 |
ctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttg |
347 |
Q |
| |
|
||| ||||||| ||| |||| | ||| || |||||| || |||||||||||||||| | |||| | ||||||||| ||||| |
|
|
| T |
924544 |
gtgaagtatcagagtggcaaatagcaacagctttaactttggttccatcaacaccttccataggcaaatagtaaactttagttg |
924461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 399
Target Start/End: Complemental strand, 11075 - 10845
Alignment:
| Q |
169 |
ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcactagaaaagccaaatgtttagggttccattctgat |
268 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
11075 |
ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat |
10976 |
T |
|
| Q |
269 |
gtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaa |
368 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| |||||||||| |
|
|
| T |
10975 |
gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa |
10876 |
T |
|
| Q |
369 |
aaactgcataagggtaattctctttgtgaca |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
10875 |
acactgcataagggtaattctctttgtgaca |
10845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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