View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_24 (Length: 391)
Name: NF3140_low_24
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 43864479 - 43864124
Alignment:
| Q |
13 |
aatattgtaagggttatatttagattgcaagaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaat |
112 |
Q |
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| T |
43864479 |
aatattgtaagggttatatttagattgcaagaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaat |
43864380 |
T |
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| Q |
113 |
tgctnnnnnnntaatttgaaaagaccaacctcatcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcacgtt |
212 |
Q |
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| T |
43864379 |
tgctaaaaaa--aaattgaaaagaccaacctcgtcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcatgtt |
43864282 |
T |
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| Q |
213 |
gatttgacaacaacaaaataaatataattataagtttatttttgaggcactgacctgctannnnnnngtcaaatcgaca-cgattaaatcatcatttcat |
311 |
Q |
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| T |
43864281 |
gatttgacaacaacaaaataaatataattataaatttatttttgaggtactgacctgctatttttttgtcaaatcgacaccgattaagtca-----tcat |
43864187 |
T |
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| Q |
312 |
ttctatccttaattatgaaaacaattttaatcaaagatttttaagtattagtcttcaatagac |
374 |
Q |
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| T |
43864186 |
ttctatccttaattatgaaaacaattttaatcaaagatttttaaatattagtcttcaatagac |
43864124 |
T |
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