View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_low_25 (Length: 386)

Name: NF3140_low_25
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_low_25
NF3140_low_25
[»] chr3 (6 HSPs)
chr3 (14-372)||(19647104-19647462)
chr3 (12-180)||(3170121-3170292)
chr3 (45-180)||(27547227-27547361)
chr3 (60-166)||(21587185-21587291)
chr3 (30-102)||(44126751-44126824)
chr3 (45-100)||(13100788-13100844)
[»] chr2 (5 HSPs)
chr2 (182-372)||(18772943-18773133)
chr2 (31-102)||(21294925-21294997)
chr2 (63-151)||(17830753-17830842)
chr2 (30-161)||(25232017-25232148)
chr2 (31-102)||(21289627-21289699)
[»] chr7 (2 HSPs)
chr7 (27-180)||(23818710-23818863)
chr7 (77-166)||(22477038-22477127)
[»] chr8 (3 HSPs)
chr8 (45-165)||(28350603-28350724)
chr8 (13-84)||(29185541-29185612)
chr8 (27-83)||(17703045-17703101)
[»] chr5 (7 HSPs)
chr5 (45-165)||(25214454-25214575)
chr5 (45-165)||(25278604-25278725)
chr5 (26-180)||(24213307-24213461)
chr5 (26-102)||(24228300-24228377)
chr5 (45-151)||(12026314-12026420)
chr5 (12-83)||(19699489-19699560)
chr5 (30-125)||(7823115-7823210)
[»] chr6 (1 HSPs)
chr6 (12-102)||(19441143-19441234)
[»] chr1 (3 HSPs)
chr1 (26-102)||(11444049-11444126)
chr1 (35-161)||(29547774-29547900)
chr1 (35-102)||(29530177-29530245)


Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 19647462 - 19647104
Alignment:
Q  14 agagtatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647462 agagtatatatcattacttcacaagtgtgtcctttacattacaacttgagttctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaac 19647363  T
Q  114 atcactaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647362 atcactaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaac 19647263  T
Q  214 aaacacatctatccttggtaaactgatttagtatacaactcccaaaaccttctttataagtgccagcacactttgcattacaacaagattgatcacattc 313  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647262 aaacacatctatccttggtaaactgatttggtatacaactcccaaaaccttctttataagtgccagcacactttgcattacaacaagattgatcacattc 19647163  T
Q  314 atcctggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgat 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647162 atcctggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgat 19647104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 3170121 - 3170292
Alignment:
Q  12 agagagtatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttatagga------tacaaatagtaagtgaatgatcaaatga 105  Q
    |||||||||||  |||||||||| ||||||||  |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||     
T  3170121 agagagtatattgcattacttca-aagtgtgttttttacattacaacttgagtcctatttataggtatagggtacaaatagtaagtgaatgatcaaatgt 3170219  T
Q  106 aattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 180  Q
    ||||||||||||||||||||||||||| ||||| |||||||  ||| |||||||| ||||| |||| ||||||||    
T  3170220 aattaaacatcactaacaatccattcattaatgagagttat--gaatgtggaagaacaaggatatgaacatccac 3170292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 27547361 - 27547227
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 143  Q
    |||||||| | ||| ||||||||||||||||||||| ||| || | || |||||||| ||| ||| ||| | |||||||||| |||||| |||||||| |    
T  27547361 ctttacatcaaaacatgagtcctatttataggataccaatcagcaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaat 27547262  T
Q  144 tataagaacgtggaagatcaaggttatggacatccac 180  Q
    ||||||||  || ||||||||  | ||||||||||||    
T  27547261 tataagaatttgaaagatcaa--taatggacatccac 27547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 21587185 - 21587291
Alignment:
Q  60 tgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaa 158  Q
    |||||||||||||||||| |||||| || ||||||||||||||| | | ||||  ||||||||| || | |||| ||||||| |||||| ||| ||||||    
T  21587185 tgagtcctatttataggacacaaatgagcaagtgaatgatcaaa-gcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  159 gatcaagg 166  Q
    ||| ||||    
T  21587284 gattaagg 21587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 44126751 - 44126824
Alignment:
Q  30 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    ||||||||||||||| || |||||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  44126751 cttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa 44126824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 13100844 - 13100788
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatca 100  Q
    |||||||| | ||| ||||||||||||||||||||||||| || |||||||||||||    
T  13100844 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgatca 13100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 182 - 372
Target Start/End: Original strand, 18772943 - 18773133
Alignment:
Q  182 tacaataatcgatttctagcttctataggaacaaacacatctatccttggtaaactgatttagtatacaactcccaaaaccttctttataagtgccagca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||| |||||    
T  18772943 tacaataatcgatttctagcttctataggaacaaacacatctatccttggtaaactgatttggaatacaagtcccaaaaccttgtttataagtggcagca 18773042  T
Q  282 cactttgcattacaacaagattgatcacattcatcctggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgat 372  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  18773043 cactttgcattacaacaagattgatcacattcaccttgatagcatgttcccatcccaatacgacacaaattctttgaggaaggattttgat 18773133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 21294925 - 21294997
Alignment:
Q  31 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    |||||||||||||| || |||||||||| | ||||||||||||||||||||||| || |||||||||||||||    
T  21294925 ttcacaagtgtgtcattcacattacaacataagtcctatttataggatacaaatgagcaagtgaatgatcaaa 21294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 17830753 - 17830842
Alignment:
Q  63 gtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaa 151  Q
    |||||||||||| |||||||||| | ||||||| ||||| ||| ||| ||| | |||||||||| |||||| |||| |||||||||||||    
T  17830753 gtcctatttatatgatacaaataagcaagtgaaagatcacatgtaatcaaagagcactaacaattcattcactaattggagttataagaa 17830842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 25232148 - 25232017
Alignment:
Q  30 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatcca 128  Q
    |||| ||||||||| |||||||||||||  |  ||||||||||| ||| |||||| || |||||||||||||||   ||||||  | ||||||| || ||    
T  25232148 cttctcaagtgtgttctttacattacaatatatgtcctatttatgggacacaaatgagcaagtgaatgatcaaa-ccaattaaggaccactaaccataca 25232050  T
Q  129 ttcagtaatgggagttataagaacgtggaagat 161  Q
    || | |||||||||||||| ||| |||||||||    
T  25232049 tttactaatgggagttataggaaggtggaagat 25232017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 21289627 - 21289699
Alignment:
Q  31 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    |||| ||||||||| || |||||||||  | |||||||||||||||| |||||| || |||||||||||||||    
T  21289627 ttcataagtgtgtcattcacattacaatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 21289699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 23818710 - 23818863
Alignment:
Q  27 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatc 126  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  23818710 ttacttcacaagtgtgtactttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatttaattaaacatcactaagaatc 23818809  T
Q  127 cattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 180  Q
    || ||| ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  23818810 cactcactaatgggagttataagaatatggaagatcaaggatatggacatccac 23818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 22477038 - 22477127
Alignment:
Q  77 atacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaagatcaagg 166  Q
    ||||||||| ||| |||||| ||||||| |||||||||||  | ||| | |||||| |||||| |||||||||||  |||||||||||||    
T  22477038 atacaaatattaattgaatggtcaaatgtaattaaacatccttgacagttcattcactaatggaagttataagaatatggaagatcaagg 22477127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 28350603 - 28350724
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 142  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  28350603 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 28350702  T
Q  143 ttataagaacgtggaagatcaag 165  Q
    |||| ||||| ||||||||||||    
T  28350703 ttat-agaacttggaagatcaag 28350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 29185541 - 29185612
Alignment:
Q  13 gagagtatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat 84  Q
    ||||||||||  |||||||||||||||||||  ||||||||||||  |  ||||||||||||||| ||||||    
T  29185541 gagagtatattgcattacttcacaagtgtgttttttacattacaatatatgtcctatttataggacacaaat 29185612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 17703101 - 17703045
Alignment:
Q  27 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaa 83  Q
    ||||||||| ||||||| |||||||| ||||  |  |||||||||||||||||||||    
T  17703101 ttacttcactagtgtgtgctttacatgacaatgtatgtcctatttataggatacaaa 17703045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 25214454 - 25214575
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 142  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25214454 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25214553  T
Q  143 ttataagaacgtggaagatcaag 165  Q
    |||| ||||| ||||||||||||    
T  25214554 ttat-agaacttggaagatcaag 25214575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 25278604 - 25278725
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 142  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25278604 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25278703  T
Q  143 ttataagaacgtggaagatcaag 165  Q
    |||| ||||| ||||||||||||    
T  25278704 ttat-agaacttggaagatcaag 25278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 24213307 - 24213461
Alignment:
Q  26 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaa 124  Q
    |||||||||||||| ||| |||||||||||||  |  ||||||||||||||| |||||| || |||||||||||||||   ||||||| | || |||| |    
T  24213307 attacttcacaagtatgtactttacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa-ccaattaaagaccaataacca 24213405  T
Q  125 tccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 180  Q
    | |||| | ||||||  |||||||||| ||||||||| ||||  || |||||||||    
T  24213406 tacatttactaatggaggttataagaaggtggaagattaaggccatcgacatccac 24213461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 24228300 - 24228377
Alignment:
Q  26 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    |||||||||||||||||| |||||||||||||  |   ||||||||||||||||||| | || |||||||||||||||    
T  24228300 attacttcacaagtgtgtactttacattacaatatagatcctatttataggatacaattgagcaagtgaatgatcaaa 24228377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 12026314 - 12026420
Alignment:
Q  45 ctttacattacaacttgagtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 143  Q
    |||||||| | ||| |||||| |||||| |||||||||||| | |||||||||||| | || ||| ||| | |||||||||| |||||| ||||| ||||    
T  12026314 ctttacatcaaaacatgagtcttatttagaggatacaaataagcaagtgaatgatcca-tgcaatcaaagagcactaacaattcattcactaatgagagt 12026412  T
Q  144 tataagaa 151  Q
    ||||||||    
T  12026413 tataagaa 12026420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 19699560 - 19699489
Alignment:
Q  12 agagagtatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaa 83  Q
    |||||||||||  |||||||| |||||||||| |||||||| ||||  |  ||| |||||||||||||||||    
T  19699560 agagagtatattacattactttacaagtgtgttctttacatgacaatgtatgtcatatttataggatacaaa 19699489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 7823115 - 7823210
Alignment:
Q  30 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaat 125  Q
    |||||||||||| || ||||||| | ||| | |||||||||||||||| |||||| || ||||||||| ||| ||| ||| ||| | ||||||||||    
T  7823115 cttcacaagtgtttc-tttacatcaaaacataagtcctatttataggacacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaat 7823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 19441143 - 19441234
Alignment:
Q  12 agagagtatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    |||||||||||   |||||||||||||||||||| ||| |||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  19441143 agagagtatattatattacttcacaagtgtgtccgttatattacaatatatgtcctatttataggacacaaatgagcaagtgaatgatcaaa 19441234  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 11444049 - 11444126
Alignment:
Q  26 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    ||||||||||||||||||  || |||||| ||  | |||||||||||||||| |||||| || |||||||||||||||    
T  11444049 attacttcacaagtgtgtaattcacattataatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 11444126  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 29547900 - 29547774
Alignment:
Q  35 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcag 133  Q
    ||||||||| |||||||||||||  |  ||||||||||||||| | |||| || |||||||||||||||  |||||||  | ||||||| || |||| |     
T  29547900 caagtgtgttctttacattacaatataggtcctatttataggacataaatgagcaagtgaatgatcaaa-caaattaaggaccactaaccatgcatttac 29547802  T
Q  134 taatgggagttataagaacgtggaagat 161  Q
    |||||||  ||||| ||| |||||||||    
T  29547801 taatggggattataggaaggtggaagat 29547774  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 29530245 - 29530177
Alignment:
Q  35 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 102  Q
    ||||||||| |||||||||||||  |  |||||||||||| || |||||| || |||||||||||||||    
T  29530245 caagtgtgttctttacattacaatataggtcctatttatatgacacaaatgagcaagtgaatgatcaaa 29530177  T

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